Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010041H06.5 |
| Conread position: | 1-132 |
| Cow position: | chr26:5307055-5307197 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-171 |
| Cow position: | chr26:18651715-18651543 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 1-202 |
| Cow position: | chr26:8307603-8307404 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-202 |
| Cow position: | chr26:9491845-9492046 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 1-202 |
| Cow position: | chr26:12145200-12144994 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-203 |
| Cow position: | chr26:33112463-33112260 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 1-205 |
| Cow position: | chr26:7687321-7687118 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 1-218 |
| Cow position: | chr26:19110103-19110324 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 1-219 |
| Cow position: | chr26:26888212-26887994 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 57, 172 |
| Conread position: | 1-240 |
| Cow position: | chr26:33736632-33736385 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 1-262 |
| Cow position: | chr26:23924767-23925036 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 254 |
| Conread position: | 1-286 |
| Cow position: | chr26:24240595-24240872 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 137 |
| Conread position: | 1-295 |
| Cow position: | chr26:2739539-2739239 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 177 |
| Conread position: | 1-296 |
| Cow position: | chr26:17148623-17148917 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 2-129 |
| Cow position: | chr26:10747706-10747579 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 2-146 |
| Cow position: | chr26:9867197-9867058 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 2-176 |
| Cow position: | chr26:34060254-34060431 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-193 |
| Cow position: | chr26:23315690-23315889 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-205 |
| Cow position: | chr26:32955712-32955501 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-218 |
| Cow position: | chr26:16783744-16783963 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 141 |
| Conread position: | 2-234 |
| Cow position: | chr26:6514762-6514997 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 2-240 |
| Cow position: | chr26:13802034-13802279 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 2-240 |
| Cow position: | chr26:32897951-32897709 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 2-296 |
| Cow position: | chr26:678059-677761 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 2-296 |
| Cow position: | chr26:13021225-13020918 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 3-170 |
| Cow position: | chr26:21637117-21636945 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-296 |
| Cow position: | chr26:7212665-7212364 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 5-194 |
| Cow position: | chr26:647801-647610 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 112 |
| Conread position: | 5-283 |
| Cow position: | chr26:14175202-14175482 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 206 |
| Conread position: | 5-296 |
| Cow position: | chr26:12964773-12964482 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 6-194 |
| Cow position: | chr26:12893501-12893312 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 6-196 |
| Cow position: | chr26:8811054-8811245 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 6-206 |
| Cow position: | chr26:34106323-34106521 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 126 |
| Conread position: | 6-296 |
| Cow position: | chr26:19774377-19774075 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 9-175 |
| Cow position: | chr26:22354343-22354510 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 9-182 |
| Cow position: | chr26:31557006-31556828 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 9-202 |
| Cow position: | chr26:31605335-31605530 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 9-240 |
| Cow position: | chr26:22892517-22892277 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 11-237 |
| Cow position: | chr26:14481622-14481399 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 12-202 |
| Cow position: | chr26:28251082-28251280 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 14-160 |
| Cow position: | chr26:27491567-27491419 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 125 |
| Conread position: | 14-164 |
| Cow position: | chr26:21992037-21992188 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 14-170 |
| Cow position: | chr26:35704318-35704480 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 14-182 |
| Cow position: | chr26:26950518-26950351 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 14-194 |
| Cow position: | chr26:20291754-20291576 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 14-196 |
| Cow position: | chr26:22152162-22152345 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 14-196 |
| Cow position: | chr26:23583012-23582827 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 14-203 |
| Cow position: | chr26:8642879-8643066 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 14-203 |
| Cow position: | chr26:31137521-31137341 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 14-217 |
| Cow position: | chr26:20769783-20769990 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 14-218 |
| Cow position: | chr26:8700113-8699904 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 14-218 |
| Cow position: | chr26:32834639-32834439 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 14-296 |
| Cow position: | chr26:19446059-19446337 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 16-203 |
| Cow position: | chr26:20825173-20824995 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 17-240 |
| Cow position: | chr26:19591418-19591649 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-240 |
| Cow position: | chr26:22033420-22033651 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 22-218 |
| Cow position: | chr26:26537584-26537377 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 24-202 |
| Cow position: | chr26:33202125-33201946 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 24-202 |
| Cow position: | chr26:33392336-33392518 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 24-203 |
| Cow position: | chr26:32652790-32652609 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 28-240 |
| Cow position: | chr26:28423234-28423456 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 29-240 |
| Cow position: | chr26:5666002-5666213 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 145, 30 |
| Conread position: | 34-296 |
| Cow position: | chr26:12940359-12940607 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 256, 14 |
| Conread position: | 36-296 |
| Cow position: | chr26:5836864-5836618 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 162 |
| Conread position: | 39-168 |
| Cow position: | chr26:19636249-19636384 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 51-236 |
| Cow position: | chr26:34611209-34611020 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 59-182 |
| Cow position: | chr26:1328875-1328752 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-296 |
| Cow position: | chr26:7314606-7314828 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 228, 143 |
| Conread position: | 71-277 |
| Cow position: | chr26:107018-107225 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 101, 156 |
| Conread position: | 73-296 |
| Cow position: | chr26:33241884-33242110 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 81-296 |
| Cow position: | chr26:25197313-25197102 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 209, 66 |
Show alignments to all cow chromosomes.