Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010041H06.5 |
| Conread position: | 1-153 |
| Cow position: | chr6:67615489-67615332 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-169 |
| Cow position: | chr6:56843097-56843268 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 1-169 |
| Cow position: | chr6:61608453-61608626 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-170 |
| Cow position: | chr6:15022606-15022432 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-182 |
| Cow position: | chr6:61269252-61269439 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-194 |
| Cow position: | chr6:20098022-20097820 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-194 |
| Cow position: | chr6:29485032-29485222 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 31 |
| Conread position: | 1-194 |
| Cow position: | chr6:66375388-66375194 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 1-202 |
| Cow position: | chr6:57571419-57571626 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:25615162-25614943 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:38218613-38218814 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 1-205 |
| Cow position: | chr6:17414506-17414295 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-205 |
| Cow position: | chr6:47519992-47520203 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-208 |
| Cow position: | chr6:1499582-1499792 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 179 |
| Conread position: | 1-218 |
| Cow position: | chr6:19264554-19264336 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 1-235 |
| Cow position: | chr6:11192525-11192291 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 1-238 |
| Cow position: | chr6:20929574-20929337 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 177 |
| Conread position: | 1-240 |
| Cow position: | chr6:7190177-7189935 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 1-240 |
| Cow position: | chr6:8637217-8637471 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-240 |
| Cow position: | chr6:13687871-13687622 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 1-240 |
| Cow position: | chr6:26915272-26915522 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 137 |
| Conread position: | 1-240 |
| Cow position: | chr6:36196156-36196399 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 1-296 |
| Cow position: | chr6:51581311-51581032 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 2-141 |
| Cow position: | chr6:18961573-18961431 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 2-146 |
| Cow position: | chr6:12829281-12829134 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 2-153 |
| Cow position: | chr6:36493606-36493443 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 2-157 |
| Cow position: | chr6:7170404-7170246 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 2-165 |
| Cow position: | chr6:17245664-17245503 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 2-168 |
| Cow position: | chr6:29210440-29210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 2-182 |
| Cow position: | chr6:899347-899166 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 2-182 |
| Cow position: | chr6:58597561-58597379 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 2-194 |
| Cow position: | chr6:53651986-53652179 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 2-194 |
| Cow position: | chr6:59770170-59770363 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 2-201 |
| Cow position: | chr6:16423643-16423847 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 2-202 |
| Cow position: | chr6:7128464-7128257 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 14, 190 |
| Conread position: | 2-202 |
| Cow position: | chr6:47574849-47575053 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-202 |
| Cow position: | chr6:55282344-55282146 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 2-202 |
| Cow position: | chr6:60350352-60350145 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-205 |
| Cow position: | chr6:29248434-29248627 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 2-207 |
| Cow position: | chr6:22985915-22985705 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 176 |
| Conread position: | 2-208 |
| Cow position: | chr6:37634727-37634948 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 206 |
| Conread position: | 2-211 |
| Cow position: | chr6:47640490-47640277 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 199 |
| Conread position: | 2-237 |
| Cow position: | chr6:8966034-8966279 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 2-240 |
| Cow position: | chr6:44194599-44194359 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 2-240 |
| Cow position: | chr6:53460629-53460378 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-240 |
| Cow position: | chr6:60468180-60468430 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-241 |
| Cow position: | chr6:4383429-4383669 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 2-283 |
| Cow position: | chr6:15243199-15243471 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 61, 197 |
| Conread position: | 2-296 |
| Cow position: | chr6:21869705-21869405 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 3-282 |
| Cow position: | chr6:48468950-48469219 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 5-182 |
| Cow position: | chr6:18118106-18117923 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 5-202 |
| Cow position: | chr6:49398668-49398473 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 5-202 |
| Cow position: | chr6:54991057-54990854 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 5-203 |
| Cow position: | chr6:23466083-23465886 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 5-205 |
| Cow position: | chr6:15305523-15305718 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 5-233 |
| Cow position: | chr6:59603265-59603028 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 5-240 |
| Cow position: | chr6:31535625-31535379 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 5-296 |
| Cow position: | chr6:6400897-6401188 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 6-170 |
| Cow position: | chr6:28318353-28318512 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 6-192 |
| Cow position: | chr6:9302768-9302583 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 130 |
| Conread position: | 6-194 |
| Cow position: | chr6:4864601-4864408 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 6-194 |
| Cow position: | chr6:5114098-5113914 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 6-194 |
| Cow position: | chr6:38641441-38641631 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 10, 129 |
| Conread position: | 6-195 |
| Cow position: | chr6:38614763-38614952 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 6-203 |
| Cow position: | chr6:17794812-17794616 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 6-237 |
| Cow position: | chr6:21231474-21231703 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 6-237 |
| Cow position: | chr6:36470619-36470380 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 6-241 |
| Cow position: | chr6:17068702-17068457 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 6-241 |
| Cow position: | chr6:32287585-32287826 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 10, 155 |
| Conread position: | 6-296 |
| Cow position: | chr6:38207544-38207263 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 6-296 |
| Cow position: | chr6:67950900-67951180 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 7-203 |
| Cow position: | chr6:37332057-37332258 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 7-240 |
| Cow position: | chr6:63720143-63720386 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 193 |
| Conread position: | 9-240 |
| Cow position: | chr6:38640181-38640428 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 9-240 |
| Cow position: | chr6:46860216-46859976 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 9-240 |
| Cow position: | chr6:54490783-54490552 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 9-296 |
| Cow position: | chr6:67456675-67456962 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 163, 10 |
| Conread position: | 10-168 |
| Cow position: | chr6:26728573-26728419 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 10-202 |
| Cow position: | chr6:12551221-12551417 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 10-202 |
| Cow position: | chr6:24468438-24468249 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 10-218 |
| Cow position: | chr6:60274059-60273846 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 10-288 |
| Cow position: | chr6:46283049-46282778 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 11-194 |
| Cow position: | chr6:32853140-32853326 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 11-194 |
| Cow position: | chr6:35613470-35613278 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 11-240 |
| Cow position: | chr6:120199-120434 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 12-182 |
| Cow position: | chr6:15937896-15937728 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 164, 31 |
| Conread position: | 12-296 |
| Cow position: | chr6:60516782-60517061 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 14-147 |
| Cow position: | chr6:24962099-24962237 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 14-151 |
| Cow position: | chr6:1944669-1944809 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 14-168 |
| Cow position: | chr6:68376368-68376209 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 14-179 |
| Cow position: | chr6:130204-130039 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 14-182 |
| Cow position: | chr6:3350976-3351155 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 14-182 |
| Cow position: | chr6:23248008-23247839 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 14-186 |
| Cow position: | chr6:528323-528153 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 14-194 |
| Cow position: | chr6:2078863-2078675 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 14-194 |
| Cow position: | chr6:60739973-60740153 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 14-194 |
| Cow position: | chr6:68652396-68652212 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 14-194 |
| Cow position: | chr6:69500421-69500600 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 14-199 |
| Cow position: | chr6:45065059-45064873 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 14-201 |
| Cow position: | chr6:48112155-48112342 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 14-201 |
| Cow position: | chr6:60144242-60144052 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 14-202 |
| Cow position: | chr6:23695951-23696147 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 14-202 |
| Cow position: | chr6:28977087-28976893 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 14-202 |
| Cow position: | chr6:58590226-58590420 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 14-203 |
| Cow position: | chr6:1422442-1422634 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 14-203 |
| Cow position: | chr6:46465780-46465969 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 162, 157 |
| Conread position: | 14-203 |
| Cow position: | chr6:54132768-54132960 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 82 |
| Conread position: | 14-205 |
| Cow position: | chr6:24031330-24031526 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 14-208 |
| Cow position: | chr6:31078915-31078716 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 14-235 |
| Cow position: | chr6:19292756-19292987 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 14-237 |
| Cow position: | chr6:7119663-7119439 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 185 |
| Conread position: | 14-238 |
| Cow position: | chr6:15300867-15300648 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 195, 9 |
| Conread position: | 14-240 |
| Cow position: | chr6:28999975-28999763 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 14-240 |
| Cow position: | chr6:37395451-37395209 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 14-240 |
| Cow position: | chr6:52478457-52478217 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 14-240 |
| Cow position: | chr6:65870987-65871225 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 14-240 |
| Cow position: | chr6:67451415-67451174 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 14-293 |
| Cow position: | chr6:5609489-5609223 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 14-293 |
| Cow position: | chr6:7130933-7130641 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 235 |
| Conread position: | 14-296 |
| Cow position: | chr6:9736693-9736422 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 14-296 |
| Cow position: | chr6:23353510-23353779 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 14-296 |
| Cow position: | chr6:35993543-35993831 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 14-296 |
| Cow position: | chr6:59718753-59719034 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 14-296 |
| Cow position: | chr6:68816123-68816393 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 14-297 |
| Cow position: | chr6:694190-693921 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 14-297 |
| Cow position: | chr6:13040408-13040677 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 190, 42 |
| Conread position: | 14-304 |
| Cow position: | chr6:61168726-61168998 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 249, 34 |
| Conread position: | 15-182 |
| Cow position: | chr6:582314-582146 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 15-240 |
| Cow position: | chr6:32121863-32122089 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 16-201 |
| Cow position: | chr6:67643732-67643545 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 16-240 |
| Cow position: | chr6:10106024-10105786 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-170 |
| Cow position: | chr6:32517139-32516994 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 18-196 |
| Cow position: | chr6:50976011-50976189 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 19-204 |
| Cow position: | chr6:66570399-66570587 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 170 |
| Conread position: | 19-205 |
| Cow position: | chr6:38853693-38853509 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 20-203 |
| Cow position: | chr6:9452810-9452621 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 20-237 |
| Cow position: | chr6:34196187-34195971 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 177 |
| Conread position: | 22-204 |
| Cow position: | chr6:36202785-36202966 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 22-237 |
| Cow position: | chr6:34119390-34119172 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 112 |
| Conread position: | 24-240 |
| Cow position: | chr6:45690636-45690421 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 172, 21 |
| Conread position: | 24-296 |
| Cow position: | chr6:60266215-60265945 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 25-205 |
| Cow position: | chr6:19259377-19259192 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-169 |
| Cow position: | chr6:12197148-12197294 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 28-182 |
| Cow position: | chr6:49437303-49437460 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 29-182 |
| Cow position: | chr6:36921003-36920848 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 32-240 |
| Cow position: | chr6:53024831-53024617 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 33-182 |
| Cow position: | chr6:68685530-68685680 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 33-194 |
| Cow position: | chr6:48097626-48097460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 33-194 |
| Cow position: | chr6:61524231-61524066 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 33-202 |
| Cow position: | chr6:50504429-50504603 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 33-202 |
| Cow position: | chr6:62056588-62056761 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 33-296 |
| Cow position: | chr6:63065800-63066060 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 34-202 |
| Cow position: | chr6:26155128-26155295 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 34-241 |
| Cow position: | chr6:30023870-30024075 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 157, 22 |
| Conread position: | 36-194 |
| Cow position: | chr6:53089986-53090148 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 38-182 |
| Cow position: | chr6:53546016-53546162 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 40-182 |
| Cow position: | chr6:4702842-4702697 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 40-203 |
| Cow position: | chr6:58725358-58725516 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 56-240 |
| Cow position: | chr6:21470427-21470238 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 127, 13 |
| Conread position: | 71-205 |
| Cow position: | chr6:1871182-1871048 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-205 |
| Cow position: | chr6:43651768-43651902 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-303 |
| Cow position: | chr6:23938091-23938305 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 171, 161 |
Show alignments to all cow chromosomes.