Cow genome map

Conread name: Ss1.1-Lng1-LNG010041H06.5

Conread position: 1-132
Cow position: chrX:13785434-13785296 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 116
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 1-187
Cow position: chrX:45414371-45414183 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 71

Conread position: 1-199
Cow position: chrX:7571832-7572036 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 202

Conread position: 1-201
Cow position: chrX:36067942-36068148 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 1-202
Cow position: chrX:29120975-29121181 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 1-202
Cow position: chrX:33493706-33493910 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 139

Conread position: 1-202
Cow position: chrX:37781182-37780975 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 1-205
Cow position: chrX:18273129-18272920 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 140

Conread position: 1-237
Cow position: chrX:29050176-29050423 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 131

Conread position: 1-238
Cow position: chrX:29542290-29542047 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 15, 165

Conread position: 1-240
Cow position: chrX:918798-918543 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 158

Conread position: 1-240
Cow position: chrX:1466090-1466343 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-240
Cow position: chrX:6544185-6544428 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 15, 32

Conread position: 1-245
Cow position: chrX:34376876-34377127 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 12, 80

Conread position: 1-293
Cow position: chrX:9252233-9251954 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 87

Conread position: 1-293
Cow position: chrX:38853127-38853420 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 15, 30

Conread position: 1-296
Cow position: chrX:29229939-29230219 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 54

Conread position: 2-132
Cow position: chrX:26875953-26875817 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 2-182
Cow position: chrX:45976852-45977040 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 2-182
Cow position: chrX:47345264-47345441 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 60

Conread position: 2-194
Cow position: chrX:42470012-42469815 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 30

Conread position: 2-194
Cow position: chrX:45110586-45110782 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 126

Conread position: 2-196
Cow position: chrX:45846029-45846229 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 11, 112

Conread position: 2-202
Cow position: chrX:34411772-34411980 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 2-202
Cow position: chrX:40035513-40035306 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 117

Conread position: 2-202
Cow position: chrX:41526591-41526395 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 59, 114

Conread position: 2-205
Cow position: chrX:19273792-19273570 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 2-219
Cow position: chrX:24424458-24424248 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 59

Conread position: 2-235
Cow position: chrX:4153105-4152866 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 14, 190

Conread position: 2-236
Cow position: chrX:9201480-9201721 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 2-236
Cow position: chrX:11656022-11656257 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 57

Conread position: 2-240
Cow position: chrX:13647855-13647601 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 38

Conread position: 2-240
Cow position: chrX:27431984-27431738 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 65

Conread position: 2-240
Cow position: chrX:34792378-34792137 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 14, 62

Conread position: 2-240
Cow position: chrX:34837124-34836888 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 182, 30

Conread position: 2-245
Cow position: chrX:35542825-35543072 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 42

Conread position: 2-293
Cow position: chrX:30338016-30337745 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 55

Conread position: 2-296
Cow position: chrX:616332-616027 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 236

Conread position: 2-296
Cow position: chrX:26881638-26881350 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 14, 201

Conread position: 3-182
Cow position: chrX:12082394-12082210 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 133

Conread position: 5-201
Cow position: chrX:41884481-41884279 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 5-203
Cow position: chrX:43115085-43115285 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 42

Conread position: 5-206
Cow position: chrX:35224229-35224435 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 0

Conread position: 5-218
Cow position: chrX:17725907-17726130 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 5-218
Cow position: chrX:22074729-22074950 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 133

Conread position: 5-218
Cow position: chrX:34532454-34532671 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 11, 29

Conread position: 5-240
Cow position: chrX:6413981-6414221 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 11, 53

Conread position: 5-240
Cow position: chrX:20584257-20584495 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 11, 199

Conread position: 5-296
Cow position: chrX:22115383-22115102 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 15, 194

Conread position: 5-296
Cow position: chrX:40557748-40557446 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 11, 246

Conread position: 6-182
Cow position: chrX:9365741-9365562 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 6-194
Cow position: chrX:22387308-22387124 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 66

Conread position: 6-194
Cow position: chrX:29601896-29601702 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 6-194
Cow position: chrX:44396952-44397135 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 59

Conread position: 6-203
Cow position: chrX:15815021-15815221 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 53

Conread position: 6-206
Cow position: chrX:42171362-42171159 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 165

Conread position: 6-218
Cow position: chrX:619070-618858 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 12, 145

Conread position: 6-237
Cow position: chrX:11614634-11614865 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 10, 126

Conread position: 6-240
Cow position: chrX:31436412-31436652 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 26

Conread position: 6-283
Cow position: chrX:27394086-27393817 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 28

Conread position: 6-296
Cow position: chrX:46291072-46291353 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 44

Conread position: 6-323
Cow position: chrX:5118568-5118234 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 10, 32

Conread position: 6-332
Cow position: chrX:23514081-23513763 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 111

Conread position: 7-202
Cow position: chrX:42235591-42235390 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 7-237
Cow position: chrX:12437333-12437103 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 61, 129

Conread position: 9-162
Cow position: chrX:13146920-13147075 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 9-181
Cow position: chrX:7509079-7509252 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 130

Conread position: 9-194
Cow position: chrX:9651086-9650898 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 18

Conread position: 9-222
Cow position: chrX:8925640-8925853 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 62

Conread position: 9-242
Cow position: chrX:21986353-21986116 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 50, 98

Conread position: 9-296
Cow position: chrX:40269427-40269720 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 225

Conread position: 10-194
Cow position: chrX:32978137-32977959 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 45, 61

Conread position: 10-195
Cow position: chrX:32623507-32623698 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 10-232
Cow position: chrX:14973800-14973582 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 100

Conread position: 11-240
Cow position: chrX:14275805-14275565 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 12-218
Cow position: chrX:29680318-29680110 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 13-212
Cow position: chrX:37574787-37574985 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 185, 50

Conread position: 14-121
Cow position: chrX:5677948-5677838 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 14-170
Cow position: chrX:13913013-13913177 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 14

Conread position: 14-170
Cow position: chrX:21642534-21642380 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 14-182
Cow position: chrX:38006820-38006656 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 14-182
Cow position: chrX:45403883-45403711 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 14-194
Cow position: chrX:169601-169420 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 107

Conread position: 14-194
Cow position: chrX:38549391-38549573 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 56

Conread position: 14-194
Cow position: chrX:41192646-41192830 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 9

Conread position: 14-194
Cow position: chrX:45174792-45174976 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 14-202
Cow position: chrX:17794921-17795115 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 9

Conread position: 14-203
Cow position: chrX:14884014-14883820 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 58, 182

Conread position: 14-203
Cow position: chrX:42381158-42380977 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 14-206
Cow position: chrX:37232357-37232545 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 14-218
Cow position: chrX:31294619-31294421 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 190, 42

Conread position: 14-230
Cow position: chrX:34313973-34314186 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 65, 0

Conread position: 14-236
Cow position: chrX:45502089-45502317 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 48, 222

Conread position: 14-237
Cow position: chrX:38964049-38964277 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 178

Conread position: 14-237
Cow position: chrX:42927875-42927649 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 190, 48

Conread position: 14-237
Cow position: chrX:46072876-46072650 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 191

Conread position: 14-240
Cow position: chrX:8869460-8869221 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 14-240
Cow position: chrX:19469562-19469332 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 0

Conread position: 14-240
Cow position: chrX:40685387-40685146 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 14-275
Cow position: chrX:6690312-6690050 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 50, 34

Conread position: 14-293
Cow position: chrX:31311973-31312265 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 63, 12

Conread position: 14-296
Cow position: chrX:878439-878138 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 43, 0

Conread position: 14-296
Cow position: chrX:7695687-7695975 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 32, 132

Conread position: 14-296
Cow position: chrX:40826807-40826538 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 68

Conread position: 14-304
Cow position: chrX:32820974-32821258 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 107

Conread position: 15-170
Cow position: chrX:27680340-27680500 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 15-194
Cow position: chrX:11073247-11073065 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 21

Conread position: 15-194
Cow position: chrX:46429875-46429693 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 11

Conread position: 16-218
Cow position: chrX:35985764-35985967 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 101

Conread position: 16-240
Cow position: chrX:5919436-5919675 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 17-182
Cow position: chrX:47362676-47362509 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 15

Conread position: 17-194
Cow position: chrX:25328659-25328490 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 18-208
Cow position: chrX:11938985-11938794 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 44

Conread position: 18-219
Cow position: chrX:34505103-34504897 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 52, 171

Conread position: 18-237
Cow position: chrX:13177520-13177301 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 80, 41

Conread position: 20-218
Cow position: chrX:20957198-20957388 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 20-240
Cow position: chrX:41871015-41871240 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 43, 218

Conread position: 21-218
Cow position: chrX:22393035-22392835 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 38, 167

Conread position: 22-164
Cow position: chrX:44095209-44095356 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 24-202
Cow position: chrX:37072348-37072523 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 24

Conread position: 25-202
Cow position: chrX:27306407-27306588 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 26-237
Cow position: chrX:2523722-2523519 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 26-293
Cow position: chrX:6599828-6599565 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 174

Conread position: 27-234
Cow position: chrX:11326143-11325931 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 150

Conread position: 30-204
Cow position: chrX:24749047-24749221 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 33, 109

Conread position: 30-234
Cow position: chrX:47061354-47061564 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 33-170
Cow position: chrX:29585083-29585221 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 33-182
Cow position: chrX:19394515-19394667 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 34-296
Cow position: chrX:40532080-40531814 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 40, 204

Conread position: 35-202
Cow position: chrX:12979872-12979700 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 35-240
Cow position: chrX:4289404-4289617 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 37-202
Cow position: chrX:22482732-22482557 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 109

Conread position: 37-202
Cow position: chrX:38642216-38642383 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 44-202
Cow position: chrX:4616035-4615877 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 148

Conread position: 55-240
Cow position: chrX:27145592-27145782 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 148, 19

Conread position: 56-212
Cow position: chrX:45383057-45382902 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 56-240
Cow position: chrX:39290347-39290537 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 132, 0

Conread position: 61-296
Cow position: chrX:36848585-36848345 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 71

Conread position: 62-237
Cow position: chrX:12972675-12972858 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 63-240
Cow position: chrX:2935952-2936136 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 141, 0

Conread position: 71-240
Cow position: chrX:4466970-4467134 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 125, 0

Conread position: 72-219
Cow position: chrX:32943072-32942925 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 72-237
Cow position: chrX:27668954-27668781 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 86-296
Cow position: chrX:34508562-34508772 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 104, 96

Conread position: 88-240
Cow position: chrX:20340623-20340475 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 0

Show alignments to all cow chromosomes.