Cow genome map

Conread name: Ss1.1-Lng1-LNG010046H10.5

Conread position: 281-501
Cow position: chr19:39340100-39340326 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 42, 5

Conread position: 321-502
Cow position: chr19:33906109-33905925 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 78

Conread position: 322-432
Cow position: chr19:14157155-14157266 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 322-467
Cow position: chr19:10613280-10613132 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 322-494
Cow position: chr19:20662167-20662345 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 322-494
Cow position: chr19:48533780-48533602 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 322-499
Cow position: chr19:55843052-55842869 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 322-500
Cow position: chr19:2588247-2588062 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 76, 0

Conread position: 322-500
Cow position: chr19:12651788-12651604 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 322-500
Cow position: chr19:12776174-12775993 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 77

Conread position: 322-500
Cow position: chr19:35611778-35611963 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 322-500
Cow position: chr19:35621575-35621389 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 73, 0

Conread position: 322-500
Cow position: chr19:37653228-37653046 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 48

Conread position: 322-500
Cow position: chr19:39182486-39182670 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 322-500
Cow position: chr19:40849435-40849617 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 76, 172

Conread position: 322-502
Cow position: chr19:41386-41200 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 123, 0

Conread position: 322-502
Cow position: chr19:1293402-1293216 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 322-502
Cow position: chr19:30517855-30517669 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 322-502
Cow position: chr19:40016534-40016720 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 322-502
Cow position: chr19:43148634-43148448 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 322-503
Cow position: chr19:890144-890331 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 322-503
Cow position: chr19:5902079-5901892 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:165076-165264 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:207552-207365 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:474444-474632 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:776566-776380 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 104

Conread position: 322-504
Cow position: chr19:799298-799106 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 322-504
Cow position: chr19:1579163-1578971 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 322-504
Cow position: chr19:1585519-1585332 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:1663082-1662894 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 153
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 84, 0

Conread position: 322-504
Cow position: chr19:2270249-2270433 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 135, 79

Conread position: 322-504
Cow position: chr19:6440246-6440058 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 322-504
Cow position: chr19:7345086-7344898 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 322-504
Cow position: chr19:7480882-7481071 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 322-504
Cow position: chr19:10194694-10194506 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:12553180-12553369 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:15444811-15444999 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:16317557-16317745 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:19388886-19388698 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:20107790-20107602 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:20611386-20611198 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:21337780-21337967 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:22512297-22512108 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:24734195-24734002 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:28795267-28795452 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 50

Conread position: 322-504
Cow position: chr19:28801509-28801696 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 50

Conread position: 322-504
Cow position: chr19:29364446-29364259 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 322-504
Cow position: chr19:33527899-33527711 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 322-504
Cow position: chr19:33641123-33640935 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:33944619-33944431 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:38811447-38811257 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 82

Conread position: 322-504
Cow position: chr19:42466044-42465855 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 322-504
Cow position: chr19:47189399-47189586 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 69

Conread position: 322-504
Cow position: chr19:55164601-55164790 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 322-504
Cow position: chr19:55979837-55980024 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 76, 171

Conread position: 322-510
Cow position: chr19:4388635-4388441 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 322-511
Cow position: chr19:16478814-16479008 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 77, 50

Conread position: 322-511
Cow position: chr19:28596427-28596234 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 42

Conread position: 322-511
Cow position: chr19:29628786-29628979 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 77, 136

Conread position: 322-512
Cow position: chr19:27614386-27614587 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 322-525
Cow position: chr19:55377947-55377739 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 76, 195

Conread position: 323-466
Cow position: chr19:1354231-1354375 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 323-493
Cow position: chr19:258310-258135 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 102

Conread position: 323-497
Cow position: chr19:5732551-5732374 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 7

Conread position: 323-499
Cow position: chr19:1586217-1586398 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 73, 14

Conread position: 323-500
Cow position: chr19:436285-436468 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 323-504
Cow position: chr19:7491151-7490964 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 323-504
Cow position: chr19:30474097-30474282 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 150
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 57, 30

Conread position: 324-498
Cow position: chr19:33649319-33649499 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 74, 0

Conread position: 324-500
Cow position: chr19:33876466-33876285 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 74, 97

Conread position: 324-502
Cow position: chr19:40800492-40800308 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 324-504
Cow position: chr19:354124-354309 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 90

Conread position: 324-504
Cow position: chr19:730940-731127 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 324-504
Cow position: chr19:9705139-9705321 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 75

Conread position: 324-504
Cow position: chr19:52148499-52148684 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 49

Conread position: 325-500
Cow position: chr19:175517-175337 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 325-504
Cow position: chr19:2261385-2261570 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 326-494
Cow position: chr19:35382108-35382281 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 0

Conread position: 326-504
Cow position: chr19:100650-100834 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 326-504
Cow position: chr19:39750272-39750084 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 0

Conread position: 329-500
Cow position: chr19:42724721-42724545 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 72, 80

Conread position: 329-504
Cow position: chr19:1151719-1151538 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 150
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 330-504
Cow position: chr19:34654060-34654240 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 34

Conread position: 331-496
Cow position: chr19:47669935-47669760 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 333-503
Cow position: chr19:6555019-6554847 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 124, 66

Conread position: 335-497
Cow position: chr19:40360886-40360725 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 111, 22

Conread position: 341-504
Cow position: chr19:42303708-42303876 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 105, 55

Show alignments to all cow chromosomes.