Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010046H10.5 |
| Conread position: | 321-498 |
| Cow position: | chr25:35755507-35755690 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 322-460 |
| Cow position: | chr25:7223696-7223836 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-463 |
| Cow position: | chr25:20495306-20495168 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 322-485 |
| Cow position: | chr25:35553419-35553252 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 104 |
| Conread position: | 322-500 |
| Cow position: | chr25:9395154-9394978 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 322-500 |
| Cow position: | chr25:39387371-39387187 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 322-501 |
| Cow position: | chr25:21949534-21949348 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 322-501 |
| Cow position: | chr25:23773506-23773682 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 322-502 |
| Cow position: | chr25:12939472-12939658 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-502 |
| Cow position: | chr25:14962209-14962394 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-502 |
| Cow position: | chr25:17554736-17554921 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 322-502 |
| Cow position: | chr25:30810536-30810354 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 113 |
| Conread position: | 322-503 |
| Cow position: | chr25:22197651-22197838 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-503 |
| Cow position: | chr25:41098461-41098647 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:11043358-11043170 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 322-504 |
| Cow position: | chr25:17586284-17586473 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:18159048-18159235 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 322-504 |
| Cow position: | chr25:18190635-18190828 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:18886732-18886920 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:19337586-19337770 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 322-504 |
| Cow position: | chr25:20633502-20633314 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:22150811-22150623 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:24007643-24007455 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:26281760-26281571 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:26781347-26781535 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:27019502-27019690 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:29526126-29526314 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:29803010-29803201 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 322-504 |
| Cow position: | chr25:32577928-32578110 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 142 |
| Conread position: | 322-504 |
| Cow position: | chr25:33262180-33261996 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 120, 74 |
| Conread position: | 322-504 |
| Cow position: | chr25:33838115-33837928 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 322-504 |
| Cow position: | chr25:33990512-33990698 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 322-504 |
| Cow position: | chr25:34343970-34344157 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 322-504 |
| Cow position: | chr25:39554890-39555079 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 323-485 |
| Cow position: | chr25:39512746-39512579 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 323-498 |
| Cow position: | chr25:34509445-34509625 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 82 |
| Conread position: | 323-500 |
| Cow position: | chr25:28862605-28862422 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 323-501 |
| Cow position: | chr25:35561763-35561948 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 323-504 |
| Cow position: | chr25:393008-392822 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 323-504 |
| Cow position: | chr25:18179756-18179571 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 323-504 |
| Cow position: | chr25:33688485-33688672 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 324-497 |
| Cow position: | chr25:40389977-40390156 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 324-502 |
| Cow position: | chr25:24449504-24449684 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 324-504 |
| Cow position: | chr25:2594511-2594326 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 324-504 |
| Cow position: | chr25:25480875-25481060 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 325-493 |
| Cow position: | chr25:36512042-36511868 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 325-502 |
| Cow position: | chr25:18128968-18128787 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 112 |
| Conread position: | 326-503 |
| Cow position: | chr25:25109296-25109478 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 326-504 |
| Cow position: | chr25:35568153-35568337 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 329-502 |
| Cow position: | chr25:41120735-41120558 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 87 |
| Conread position: | 330-500 |
| Cow position: | chr25:13959798-13959622 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 331-485 |
| Cow position: | chr25:3373916-3374076 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 336-504 |
| Cow position: | chr25:36813988-36814163 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 341-500 |
| Cow position: | chr25:34503513-34503678 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 345-458 |
| Cow position: | chr25:23912212-23912099 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 351-504 |
| Cow position: | chr25:26355866-26355706 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 353-504 |
| Cow position: | chr25:34667031-34667187 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 379-504 |
| Cow position: | chr25:34615605-34615474 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.