Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 1-492 |
| Cow position: | chr13:39930689-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 5 |
| Conread position: | 22-576 |
| Cow position: | chr13:39930624-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 82 |
| Conread position: | 23-250 |
| Cow position: | chr13:56317929-56318156 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-545 |
| Cow position: | chr13:39984381-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 143 |
| Conread position: | 23-605 |
| Cow position: | chr13:56333693-56334284 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 363 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 353, 415 |
| Conread position: | 23-626 |
| Cow position: | chr13:22124906-22125509 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 155 |
| Conread position: | 23-626 |
| Cow position: | chr13:24162632-24163235 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 23-630 |
| Cow position: | chr13:22124822-22125427 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 370 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 23-630 |
| Cow position: | chr13:24162548-24163153 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 23-784 |
| Cow position: | chr13:39984129-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 23-829 |
| Cow position: | chr13:39984045-39984860 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 24-335 |
| Cow position: | chr13:56317487-56317796 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 24-367 |
| Cow position: | chr13:56292136-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 24-577 |
| Cow position: | chr13:22125075-22125628 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 160 |
| Conread position: | 24-626 |
| Cow position: | chr13:22124991-22125593 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 24-626 |
| Cow position: | chr13:22125159-22125761 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 24-626 |
| Cow position: | chr13:24162885-24163487 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 352 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 24-628 |
| Cow position: | chr13:22124739-22125343 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 24-629 |
| Cow position: | chr13:24162465-24163070 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 24-629 |
| Cow position: | chr13:24162717-24163322 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 33-621 |
| Cow position: | chr13:24163062-24163650 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 346 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 140, 151 |
| Conread position: | 44-621 |
| Cow position: | chr13:22125347-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 129, 140 |
| Conread position: | 45-864 |
| Cow position: | chr13:39983983-39984811 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 46-546 |
| Cow position: | chr13:56333548-56334048 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 46-829 |
| Cow position: | chr13:39983816-39984608 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 108 |
| Conread position: | 55-627 |
| Cow position: | chr13:39930573-39931145 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 55-632 |
| Cow position: | chr13:22124686-22125261 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 352 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 55-632 |
| Cow position: | chr13:24162412-24162987 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 352 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 58-421 |
| Cow position: | chr13:56317359-56317714 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 213, 115 |
| Conread position: | 60-864 |
| Cow position: | chr13:56292683-56291875 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 99-588 |
| Cow position: | chr13:56333517-56334006 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 419, 405 |
| Conread position: | 104-633 |
| Cow position: | chr13:56292297-56291779 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 104-864 |
| Cow position: | chr13:56292723-56291959 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 455 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 146, 210 |
| Conread position: | 111-864 |
| Cow position: | chr13:39983713-39984475 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 457 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 117-834 |
| Cow position: | chr13:39983971-39984697 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 205 |
| Conread position: | 153-608 |
| Cow position: | chr13:29183798-29183347 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 167-633 |
| Cow position: | chr13:56333501-56333967 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 173-628 |
| Cow position: | chr13:39930607-39931062 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 91 |
| Conread position: | 225-628 |
| Cow position: | chr13:39930575-39930978 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 210 |
Show alignments to all cow chromosomes.