Cow genome map

Conread name: Ss1.1-Lng1-LNG010075C11.5

Conread position: 1-334
Cow position:
Alignm length: 335
Alignm identity: 218
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 7

Conread position: 3-864
Cow position:
Alignm length: 862
Alignm identity: 760
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-835
Cow position:
Alignm length: 848
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 17

Conread position: 5-626
Cow position:
Alignm length: 624
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 19

Conread position: 6-328
Cow position:
Alignm length: 323
Alignm identity: 207
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 6-860
Cow position:
Alignm length: 864
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 627, 0

Conread position: 7-588
Cow position:
Alignm length: 583
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 422

Conread position: 8-642
Cow position:
Alignm length: 638
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 68

Conread position: 8-860
Cow position:
Alignm length: 865
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 435, 13

Conread position: 8-861
Cow position:
Alignm length: 867
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 6

Conread position: 14-384
Cow position:
Alignm length: 372
Alignm identity: 230
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 131

Conread position: 15-628
Cow position:
Alignm length: 618
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 428

Conread position: 18-629
Cow position:
Alignm length: 613
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 236

Conread position: 18-861
Cow position:
Alignm length: 855
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 497, 508

Conread position: 18-864
Cow position:
Alignm length: 857
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 497, 508

Conread position: 19-847
Cow position:
Alignm length: 841
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 106

Conread position: 19-857
Cow position:
Alignm length: 853
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 132

Conread position: 20-628
Cow position:
Alignm length: 613
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 86

Conread position: 20-629
Cow position:
Alignm length: 614
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 20-629
Cow position:
Alignm length: 612
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 172

Conread position: 21-505
Cow position:
Alignm length: 485
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-836
Cow position:
Alignm length: 829
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 73

Conread position: 21-842
Cow position:
Alignm length: 834
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 92

Conread position: 21-848
Cow position:
Alignm length: 841
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 95

Conread position: 21-864
Cow position:
Alignm length: 856
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 507

Conread position: 23-471
Cow position:
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-543
Cow position:
Alignm length: 523
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 79

Conread position: 23-818
Cow position:
Alignm length: 808
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 223

Conread position: 23-831
Cow position:
Alignm length: 821
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 221

Conread position: 23-842
Cow position:
Alignm length: 834
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 418

Conread position: 23-861
Cow position:
Alignm length: 850
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 218

Conread position: 23-862
Cow position:
Alignm length: 855
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 154

Conread position: 23-864
Cow position:
Alignm length: 853
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 19

Conread position: 23-864
Cow position:
Alignm length: 855
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 157

Conread position: 24-420
Cow position:
Alignm length: 401
Alignm identity: 258
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 74, 84

Conread position: 24-467
Cow position:
Alignm length: 445
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 181

Conread position: 24-470
Cow position:
Alignm length: 451
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 84

Conread position: 24-508
Cow position:
Alignm length: 487
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 84

Conread position: 24-508
Cow position:
Alignm length: 485
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 0

Conread position: 24-534
Cow position:
Alignm length: 511
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-591
Cow position:
Alignm length: 569
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 24-620
Cow position:
Alignm length: 597
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 571, 0

Conread position: 24-625
Cow position:
Alignm length: 606
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 87

Conread position: 24-626
Cow position:
Alignm length: 604
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 233

Conread position: 24-627
Cow position:
Alignm length: 606
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 90

Conread position: 24-628
Cow position:
Alignm length: 605
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-628
Cow position:
Alignm length: 606
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 24-628
Cow position:
Alignm length: 605
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-629
Cow position:
Alignm length: 607
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 79

Conread position: 24-629
Cow position:
Alignm length: 606
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-633
Cow position:
Alignm length: 610
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-658
Cow position:
Alignm length: 640
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 87

Conread position: 24-828
Cow position:
Alignm length: 823
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 83

Conread position: 24-842
Cow position:
Alignm length: 836
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 84

Conread position: 24-848
Cow position:
Alignm length: 837
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 500, 480

Conread position: 24-849
Cow position:
Alignm length: 838
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 89

Conread position: 24-861
Cow position:
Alignm length: 851
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 79

Conread position: 24-861
Cow position:
Alignm length: 848
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 624, 680

Conread position: 24-861
Cow position:
Alignm length: 856
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 24-861
Cow position:
Alignm length: 849
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 97

Conread position: 24-861
Cow position:
Alignm length: 854
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 85

Conread position: 24-862
Cow position:
Alignm length: 851
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 616, 682

Conread position: 24-863
Cow position:
Alignm length: 853
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 85

Conread position: 24-864
Cow position:
Alignm length: 850
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 609, 0

Conread position: 24-864
Cow position:
Alignm length: 851
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 607, 734

Conread position: 30-504
Cow position:
Alignm length: 476
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 85

Conread position: 30-547
Cow position:
Alignm length: 522
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 86

Conread position: 30-628
Cow position:
Alignm length: 605
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 64

Conread position: 34-841
Cow position:
Alignm length: 818
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 481

Conread position: 35-848
Cow position:
Alignm length: 824
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 143

Conread position: 44-386
Cow position:
Alignm length: 344
Alignm identity: 227
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 215, 197

Conread position: 44-617
Cow position:
Alignm length: 576
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 60

Conread position: 44-628
Cow position:
Alignm length: 585
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 44-829
Cow position:
Alignm length: 796
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 604, 663

Conread position: 45-226
Cow position:
Alignm length: 182
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 168, 0

Conread position: 45-464
Cow position:
Alignm length: 421
Alignm identity: 267
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 415, 0

Conread position: 45-549
Cow position:
Alignm length: 511
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 70

Conread position: 45-560
Cow position:
Alignm length: 520
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 71

Conread position: 45-580
Cow position:
Alignm length: 538
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 37

Conread position: 45-834
Cow position:
Alignm length: 802
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 312

Conread position: 45-839
Cow position:
Alignm length: 808
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 126

Conread position: 45-842
Cow position:
Alignm length: 808
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 49

Conread position: 45-843
Cow position:
Alignm length: 813
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 70

Conread position: 45-860
Cow position:
Alignm length: 830
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 45-861
Cow position:
Alignm length: 829
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 59

Conread position: 45-861
Cow position:
Alignm length: 829
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 71

Conread position: 46-823
Cow position:
Alignm length: 794
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Conread position: 46-842
Cow position:
Alignm length: 815
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 108

Conread position: 46-843
Cow position:
Alignm length: 809
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 15

Conread position: 47-626
Cow position:
Alignm length: 581
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 134

Conread position: 48-823
Cow position:
Alignm length: 789
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 390

Conread position: 48-842
Cow position:
Alignm length: 808
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 75

Conread position: 51-860
Cow position:
Alignm length: 824
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 130

Conread position: 58-629
Cow position:
Alignm length: 572
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 59-848
Cow position:
Alignm length: 801
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 262

Conread position: 60-809
Cow position:
Alignm length: 762
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 43

Conread position: 63-861
Cow position:
Alignm length: 815
Alignm identity: 478
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 40, 51

Conread position: 69-629
Cow position:
Alignm length: 564
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 203

Conread position: 97-862
Cow position:
Alignm length: 777
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 6

Conread position: 101-829
Cow position:
Alignm length: 741
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 121

Conread position: 104-849
Cow position:
Alignm length: 759
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 12

Conread position: 104-864
Cow position:
Alignm length: 777
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 74

Conread position: 110-366
Cow position:
Alignm length: 260
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 155

Conread position: 119-633
Cow position:
Alignm length: 522
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 49

Conread position: 119-844
Cow position:
Alignm length: 745
Alignm identity: 453
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 133, 137

Conread position: 122-860
Cow position:
Alignm length: 749
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 229

Conread position: 124-864
Cow position:
Alignm length: 747
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 126-629
Cow position:
Alignm length: 504
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 134-864
Cow position:
Alignm length: 741
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 97

Conread position: 159-861
Cow position:
Alignm length: 714
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 114

Conread position: 183-848
Cow position:
Alignm length: 679
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 153

Conread position: 183-864
Cow position:
Alignm length: 694
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 61

Conread position: 187-471
Cow position:
Alignm length: 286
Alignm identity: 185
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 227, 15

Conread position: 192-628
Cow position:
Alignm length: 438
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 62

Conread position: 195-861
Cow position:
Alignm length: 679
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 151

Conread position: 203-848
Cow position:
Alignm length: 659
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 52

Conread position: 208-864
Cow position:
Alignm length: 660
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 224

Conread position: 209-861
Cow position:
Alignm length: 664
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 216-628
Cow position:
Alignm length: 413
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 285-843
Cow position:
Alignm length: 573
Alignm identity: 348
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 148, 157

Conread position: 294-861
Cow position:
Alignm length: 580
Alignm identity: 348
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 123, 114

Conread position: 360-618
Cow position:
Alignm length: 259
Alignm identity: 168
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.