Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 1-346 |
| Cow position: | chr17:22452085-22451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 1-628 |
| Cow position: | chr17:22552136-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 5 |
| Conread position: | 1-864 |
| Cow position: | chr17:22552808-22551938 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 634, 5 |
| Conread position: | 8-826 |
| Cow position: | chr17:22590220-22589394 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 11-633 |
| Cow position: | chr17:22473220-22473840 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 18-633 |
| Cow position: | chr17:22589875-22589260 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 19-632 |
| Cow position: | chr17:22473312-22473923 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 22 |
| Conread position: | 19-633 |
| Cow position: | chr17:22499167-22498553 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 222 |
| Conread position: | 19-861 |
| Cow position: | chr17:22552960-22552109 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 159 |
| Conread position: | 22-299 |
| Cow position: | chr17:22451982-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-559 |
| Cow position: | chr17:22552033-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 143 |
| Conread position: | 22-864 |
| Cow position: | chr17:22552369-22551518 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 23-397 |
| Cow position: | chr17:22551864-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 233, 220 |
| Conread position: | 23-585 |
| Cow position: | chr17:22589954-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 224 |
| Conread position: | 23-625 |
| Cow position: | chr17:22452401-22451799 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 225 |
| Conread position: | 23-807 |
| Cow position: | chr17:22499331-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 316 |
| Conread position: | 23-861 |
| Cow position: | chr17:22552536-22551689 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 168 |
| Conread position: | 23-864 |
| Cow position: | chr17:22553040-22552190 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 254 |
| Conread position: | 24-583 |
| Cow position: | chr17:22452232-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 253 |
| Conread position: | 24-639 |
| Cow position: | chr17:22452316-22451701 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 222 |
| Conread position: | 24-864 |
| Cow position: | chr17:22552703-22551854 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 24-864 |
| Cow position: | chr17:22590289-22589440 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 25-864 |
| Cow position: | chr17:22553122-22552274 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 420 |
| Conread position: | 38-864 |
| Cow position: | chr17:22499400-22498565 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 44-503 |
| Cow position: | chr17:44467861-44468320 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 213, 196 |
| Conread position: | 44-626 |
| Cow position: | chr17:41440786-41440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-627 |
| Cow position: | chr17:44467441-44468024 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 349 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 215, 196 |
| Conread position: | 44-628 |
| Cow position: | chr17:41440954-41440370 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 44-628 |
| Cow position: | chr17:41441038-41440454 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 131 |
| Conread position: | 45-382 |
| Cow position: | chr17:22589512-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 304, 316 |
| Conread position: | 45-391 |
| Cow position: | chr17:41440533-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-474 |
| Cow position: | chr17:44467946-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 214, 199 |
| Conread position: | 45-586 |
| Cow position: | chr17:22589764-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 45-626 |
| Cow position: | chr17:44467778-44468359 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 352 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 216, 201 |
| Conread position: | 46-475 |
| Cow position: | chr17:41440616-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-829 |
| Cow position: | chr17:41441118-41440328 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 51-626 |
| Cow position: | chr17:44467700-44468275 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 51-628 |
| Cow position: | chr17:44467364-44467941 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 341 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 208, 189 |
| Conread position: | 51-628 |
| Cow position: | chr17:44467616-44468193 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 343 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 292, 288 |
| Conread position: | 66-631 |
| Cow position: | chr17:41440848-41440283 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 154 |
| Conread position: | 68-562 |
| Cow position: | chr17:41440678-41440184 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-819 |
| Cow position: | chr17:22473227-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 523, 5 |
| Conread position: | 106-829 |
| Cow position: | chr17:22590291-22589559 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 108-491 |
| Cow position: | chr17:22551863-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 108-826 |
| Cow position: | chr17:22452400-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 124-864 |
| Cow position: | chr17:22499398-22498649 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 587 |
| Conread position: | 163-861 |
| Cow position: | chr17:22452513-22451806 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 548 |
| Conread position: | 183-820 |
| Cow position: | chr17:22452409-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 184-861 |
| Cow position: | chr17:22590297-22589611 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 261-860 |
| Cow position: | chr17:22590304-22589696 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 265 |
| Conread position: | 518-864 |
| Cow position: | chr17:22452410-22452055 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 194 |
| Conread position: | 692-861 |
| Cow position: | chr17:22499409-22499240 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.