Cow genome map
Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
Conread position: | 1-859 |
Cow position: | chr19:23649343-23650212 (view UCSC Genome Browser custom track) |
Alignm length: | 871 |
Alignm identity: | 569 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 712 |
Conread position: | 1-864 |
Cow position: | chr19:23649427-23650301 (view UCSC Genome Browser custom track) |
Alignm length: | 876 |
Alignm identity: | 568 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 722 |
Conread position: | 6-859 |
Cow position: | chr19:23613817-23614678 (view UCSC Genome Browser custom track) |
Alignm length: | 867 |
Alignm identity: | 548 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 424, 15 |
Conread position: | 10-861 |
Cow position: | chr19:14960171-14959329 (view UCSC Genome Browser custom track) |
Alignm length: | 866 |
Alignm identity: | 572 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 246, 22 |
Conread position: | 11-864 |
Cow position: | chr19:23614240-23615103 (view UCSC Genome Browser custom track) |
Alignm length: | 867 |
Alignm identity: | 545 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 252 |
Conread position: | 19-625 |
Cow position: | chr19:23614501-23615107 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 325, 320 |
Conread position: | 20-619 |
Cow position: | chr19:14960413-14959816 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 255, 0 |
Conread position: | 20-861 |
Cow position: | chr19:23614166-23615016 (view UCSC Genome Browser custom track) |
Alignm length: | 858 |
Alignm identity: | 543 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 71 |
Conread position: | 21-829 |
Cow position: | chr19:20677594-20678411 (view UCSC Genome Browser custom track) |
Alignm length: | 824 |
Alignm identity: | 522 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 231, 237 |
Conread position: | 22-587 |
Cow position: | chr19:20678099-20678664 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 96 |
Conread position: | 22-589 |
Cow position: | chr19:20678017-20678582 (view UCSC Genome Browser custom track) |
Alignm length: | 574 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 17 |
Conread position: | 22-629 |
Cow position: | chr19:14959505-14958913 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 92 |
Conread position: | 23-382 |
Cow position: | chr19:23614757-23615116 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 155 |
Conread position: | 23-387 |
Cow position: | chr19:14959177-14958819 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 247 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 98, 58 |
Conread position: | 23-397 |
Cow position: | chr19:20635400-20635026 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 250 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 63, 77 |
Conread position: | 23-474 |
Cow position: | chr19:23597262-23597713 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 386, 402 |
Conread position: | 23-533 |
Cow position: | chr19:43570159-43569653 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 229, 235 |
Conread position: | 23-626 |
Cow position: | chr19:14940473-14941076 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 38 |
Conread position: | 23-629 |
Cow position: | chr19:23597013-23597616 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 21 |
Conread position: | 23-633 |
Cow position: | chr19:14940305-14940915 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 493, 503 |
Conread position: | 23-635 |
Cow position: | chr19:23649871-23650483 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 62 |
Conread position: | 23-860 |
Cow position: | chr19:23613413-23614259 (view UCSC Genome Browser custom track) |
Alignm length: | 849 |
Alignm identity: | 535 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 141 |
Conread position: | 23-864 |
Cow position: | chr19:14960326-14959494 (view UCSC Genome Browser custom track) |
Alignm length: | 846 |
Alignm identity: | 534 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 646, 175 |
Conread position: | 23-864 |
Cow position: | chr19:23613749-23614599 (view UCSC Genome Browser custom track) |
Alignm length: | 853 |
Alignm identity: | 550 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 224 |
Conread position: | 23-864 |
Cow position: | chr19:23614085-23614935 (view UCSC Genome Browser custom track) |
Alignm length: | 854 |
Alignm identity: | 545 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 91 |
Conread position: | 24-223 |
Cow position: | chr19:23614926-23615125 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 133 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 24-302 |
Cow position: | chr19:23650208-23650486 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 185 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 24-421 |
Cow position: | chr19:14948401-14948004 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 246 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 24-487 |
Cow position: | chr19:20635483-20635020 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 63 |
Conread position: | 24-627 |
Cow position: | chr19:23597095-23597698 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 24-628 |
Cow position: | chr19:43570242-43569642 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 63 |
Conread position: | 24-633 |
Cow position: | chr19:23649788-23650397 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 24-794 |
Cow position: | chr19:14959587-14958823 (view UCSC Genome Browser custom track) |
Alignm length: | 782 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 85 |
Conread position: | 24-841 |
Cow position: | chr19:14940222-14941048 (view UCSC Genome Browser custom track) |
Alignm length: | 830 |
Alignm identity: | 557 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 493, 505 |
Conread position: | 24-861 |
Cow position: | chr19:23649536-23650382 (view UCSC Genome Browser custom track) |
Alignm length: | 851 |
Alignm identity: | 573 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 307 |
Conread position: | 24-864 |
Cow position: | chr19:14940138-14940987 (view UCSC Genome Browser custom track) |
Alignm length: | 852 |
Alignm identity: | 558 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 611, 687 |
Conread position: | 24-864 |
Cow position: | chr19:23613582-23614431 (view UCSC Genome Browser custom track) |
Alignm length: | 853 |
Alignm identity: | 546 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 37 |
Conread position: | 24-864 |
Cow position: | chr19:23613918-23614767 (view UCSC Genome Browser custom track) |
Alignm length: | 854 |
Alignm identity: | 562 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 88 |
Conread position: | 27-859 |
Cow position: | chr19:23596849-23597687 (view UCSC Genome Browser custom track) |
Alignm length: | 846 |
Alignm identity: | 537 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 608, 184 |
Conread position: | 30-849 |
Cow position: | chr19:20677939-20678764 (view UCSC Genome Browser custom track) |
Alignm length: | 835 |
Alignm identity: | 515 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 75 |
Conread position: | 32-629 |
Cow position: | chr19:20635644-20635046 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 80 |
Conread position: | 43-830 |
Cow position: | chr19:20677698-20678496 (view UCSC Genome Browser custom track) |
Alignm length: | 807 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 216 |
Conread position: | 44-864 |
Cow position: | chr19:14939988-14940819 (view UCSC Genome Browser custom track) |
Alignm length: | 833 |
Alignm identity: | 549 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 669 |
Conread position: | 45-561 |
Cow position: | chr19:20635546-20635030 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 120 |
Conread position: | 45-633 |
Cow position: | chr19:14960472-14959886 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 323, 0 |
Conread position: | 45-633 |
Cow position: | chr19:43570379-43569801 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 105 |
Conread position: | 45-829 |
Cow position: | chr19:20677534-20678327 (view UCSC Genome Browser custom track) |
Alignm length: | 796 |
Alignm identity: | 501 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 208 |
Conread position: | 45-861 |
Cow position: | chr19:23649305-23650130 (view UCSC Genome Browser custom track) |
Alignm length: | 827 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 601, 666 |
Conread position: | 45-864 |
Cow position: | chr19:23613351-23614179 (view UCSC Genome Browser custom track) |
Alignm length: | 831 |
Alignm identity: | 525 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 196 |
Conread position: | 48-856 |
Cow position: | chr19:20677453-20678270 (view UCSC Genome Browser custom track) |
Alignm length: | 823 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 132 |
Conread position: | 58-829 |
Cow position: | chr19:20677379-20678159 (view UCSC Genome Browser custom track) |
Alignm length: | 790 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 53 |
Conread position: | 65-864 |
Cow position: | chr19:14959712-14958921 (view UCSC Genome Browser custom track) |
Alignm length: | 809 |
Alignm identity: | 497 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 51 |
Conread position: | 104-618 |
Cow position: | chr19:43570246-43569732 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 108-602 |
Cow position: | chr19:14948484-14947992 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 111-864 |
Cow position: | chr19:23596849-23597608 (view UCSC Genome Browser custom track) |
Alignm length: | 768 |
Alignm identity: | 497 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 137 |
Conread position: | 115-588 |
Cow position: | chr19:14915951-14916420 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 300 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 36, 24 |
Conread position: | 121-864 |
Cow position: | chr19:23649297-23650049 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 63 |
Conread position: | 123-834 |
Cow position: | chr19:20677360-20678080 (view UCSC Genome Browser custom track) |
Alignm length: | 724 |
Alignm identity: | 429 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 140, 125 |
Conread position: | 128-861 |
Cow position: | chr19:23613350-23614092 (view UCSC Genome Browser custom track) |
Alignm length: | 745 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 400, 394 |
Conread position: | 191-607 |
Cow position: | chr19:14948485-14948070 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 198-814 |
Cow position: | chr19:20635645-20635020 (view UCSC Genome Browser custom track) |
Alignm length: | 628 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 246 |
Conread position: | 210-861 |
Cow position: | chr19:14960475-14959817 (view UCSC Genome Browser custom track) |
Alignm length: | 662 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 426, 326 |
Conread position: | 224-859 |
Cow position: | chr19:43570451-43569818 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 54 |
Conread position: | 232-851 |
Cow position: | chr19:20677304-20677929 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 374 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 408, 55 |
Conread position: | 268-859 |
Cow position: | chr19:23596838-23597435 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 195 |
Conread position: | 280-633 |
Cow position: | chr19:14948480-14948128 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 232 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 226, 81 |
Conread position: | 320-864 |
Cow position: | chr19:14960449-14959898 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 315, 390 |
Conread position: | 339-861 |
Cow position: | chr19:23596825-23597353 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 296, 210 |
Conread position: | 372-831 |
Cow position: | chr19:20635639-20635171 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 292 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 227, 218 |
Conread position: | 373-862 |
Cow position: | chr19:23613343-23613841 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 308 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 258, 338 |
Conread position: | 377-864 |
Cow position: | chr19:14939987-14940483 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 313 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 258, 0 |
Conread position: | 458-854 |
Cow position: | chr19:14948470-14948067 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 265 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 71, 58 |
Conread position: | 475-864 |
Cow position: | chr19:43570452-43570065 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 245 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 29, 55 |
Show alignments to all cow chromosomes.