Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 1-859 |
| Cow position: | |
| Alignm length: | 871 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 712 |
| Conread position: | 1-864 |
| Cow position: | |
| Alignm length: | 876 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 722 |
| Conread position: | 6-859 |
| Cow position: | |
| Alignm length: | 867 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 15 |
| Conread position: | 10-861 |
| Cow position: | |
| Alignm length: | 866 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 22 |
| Conread position: | 11-864 |
| Cow position: | |
| Alignm length: | 867 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 252 |
| Conread position: | 19-625 |
| Cow position: | |
| Alignm length: | 608 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 320 |
| Conread position: | 20-619 |
| Cow position: | |
| Alignm length: | 600 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 20-861 |
| Cow position: | |
| Alignm length: | 858 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 21-829 |
| Cow position: | |
| Alignm length: | 824 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 237 |
| Conread position: | 22-587 |
| Cow position: | |
| Alignm length: | 571 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 96 |
| Conread position: | 22-589 |
| Cow position: | |
| Alignm length: | 574 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 17 |
| Conread position: | 22-629 |
| Cow position: | |
| Alignm length: | 610 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 23-382 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 155 |
| Conread position: | 23-387 |
| Cow position: | |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 23-397 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 23-474 |
| Cow position: | |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 402 |
| Conread position: | 23-533 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 235 |
| Conread position: | 23-626 |
| Cow position: | |
| Alignm length: | 606 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 23-629 |
| Cow position: | |
| Alignm length: | 608 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 23-633 |
| Cow position: | |
| Alignm length: | 612 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 503 |
| Conread position: | 23-635 |
| Cow position: | |
| Alignm length: | 614 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 23-860 |
| Cow position: | |
| Alignm length: | 849 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 141 |
| Conread position: | 23-864 |
| Cow position: | |
| Alignm length: | 846 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 646, 175 |
| Conread position: | 23-864 |
| Cow position: | |
| Alignm length: | 853 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 224 |
| Conread position: | 23-864 |
| Cow position: | |
| Alignm length: | 854 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 24-223 |
| Cow position: | |
| Alignm length: | 200 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-302 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-421 |
| Cow position: | |
| Alignm length: | 398 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-487 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 24-627 |
| Cow position: | |
| Alignm length: | 604 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-628 |
| Cow position: | |
| Alignm length: | 609 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 24-633 |
| Cow position: | |
| Alignm length: | 610 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-794 |
| Cow position: | |
| Alignm length: | 782 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 24-841 |
| Cow position: | |
| Alignm length: | 830 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 505 |
| Conread position: | 24-861 |
| Cow position: | |
| Alignm length: | 851 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 307 |
| Conread position: | 24-864 |
| Cow position: | |
| Alignm length: | 852 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 687 |
| Conread position: | 24-864 |
| Cow position: | |
| Alignm length: | 853 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 24-864 |
| Cow position: | |
| Alignm length: | 854 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 27-859 |
| Cow position: | |
| Alignm length: | 846 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 608, 184 |
| Conread position: | 30-849 |
| Cow position: | |
| Alignm length: | 835 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 32-629 |
| Cow position: | |
| Alignm length: | 602 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 43-830 |
| Cow position: | |
| Alignm length: | 807 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 216 |
| Conread position: | 44-864 |
| Cow position: | |
| Alignm length: | 833 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 669 |
| Conread position: | 45-561 |
| Cow position: | |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 120 |
| Conread position: | 45-633 |
| Cow position: | |
| Alignm length: | 589 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 0 |
| Conread position: | 45-633 |
| Cow position: | |
| Alignm length: | 592 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 105 |
| Conread position: | 45-829 |
| Cow position: | |
| Alignm length: | 796 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 208 |
| Conread position: | 45-861 |
| Cow position: | |
| Alignm length: | 827 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 601, 666 |
| Conread position: | 45-864 |
| Cow position: | |
| Alignm length: | 831 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 196 |
| Conread position: | 48-856 |
| Cow position: | |
| Alignm length: | 823 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 132 |
| Conread position: | 58-829 |
| Cow position: | |
| Alignm length: | 790 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 65-864 |
| Cow position: | |
| Alignm length: | 809 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 104-618 |
| Cow position: | |
| Alignm length: | 515 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-602 |
| Cow position: | |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 111-864 |
| Cow position: | |
| Alignm length: | 768 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 137 |
| Conread position: | 115-588 |
| Cow position: | |
| Alignm length: | 479 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 121-864 |
| Cow position: | |
| Alignm length: | 757 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 123-834 |
| Cow position: | |
| Alignm length: | 724 |
| Alignm identity: | 429 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 140, 125 |
| Conread position: | 128-861 |
| Cow position: | |
| Alignm length: | 745 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 394 |
| Conread position: | 191-607 |
| Cow position: | |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 198-814 |
| Cow position: | |
| Alignm length: | 628 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 246 |
| Conread position: | 210-861 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 326 |
| Conread position: | 224-859 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 232-851 |
| Cow position: | |
| Alignm length: | 630 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 408, 55 |
| Conread position: | 268-859 |
| Cow position: | |
| Alignm length: | 603 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 195 |
| Conread position: | 280-633 |
| Cow position: | |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 226, 81 |
| Conread position: | 320-864 |
| Cow position: | |
| Alignm length: | 554 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 390 |
| Conread position: | 339-861 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 210 |
| Conread position: | 372-831 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 227, 218 |
| Conread position: | 373-862 |
| Cow position: | |
| Alignm length: | 501 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 258, 338 |
| Conread position: | 377-864 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 313 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 458-854 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 475-864 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 55 |
Show alignments to all cow chromosomes.