Cow genome map

Conread name: Ss1.1-Lng1-LNG010075C11.5

Conread position: 1-859
Cow position: chr19:23649343-23650212 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 712

Conread position: 1-864
Cow position: chr19:23649427-23650301 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 722

Conread position: 6-859
Cow position: chr19:23613817-23614678 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 15

Conread position: 10-861
Cow position: chr19:14960171-14959329 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 22

Conread position: 11-864
Cow position: chr19:23614240-23615103 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 252

Conread position: 19-625
Cow position: chr19:23614501-23615107 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 320

Conread position: 20-619
Cow position: chr19:14960413-14959816 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 0

Conread position: 20-861
Cow position: chr19:23614166-23615016 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 71

Conread position: 21-829
Cow position: chr19:20677594-20678411 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 237

Conread position: 22-587
Cow position: chr19:20678099-20678664 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 96

Conread position: 22-589
Cow position: chr19:20678017-20678582 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 17

Conread position: 22-629
Cow position: chr19:14959505-14958913 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 92

Conread position: 23-382
Cow position: chr19:23614757-23615116 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 155

Conread position: 23-387
Cow position: chr19:14959177-14958819 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 98, 58

Conread position: 23-397
Cow position: chr19:20635400-20635026 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 250
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 63, 77

Conread position: 23-474
Cow position: chr19:23597262-23597713 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 402

Conread position: 23-533
Cow position: chr19:43570159-43569653 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 235

Conread position: 23-626
Cow position: chr19:14940473-14941076 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 38

Conread position: 23-629
Cow position: chr19:23597013-23597616 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 21

Conread position: 23-633
Cow position: chr19:14940305-14940915 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 503

Conread position: 23-635
Cow position: chr19:23649871-23650483 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 62

Conread position: 23-860
Cow position: chr19:23613413-23614259 (view UCSC Genome Browser custom track)
Alignm length: 849
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 141

Conread position: 23-864
Cow position: chr19:14960326-14959494 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 646, 175

Conread position: 23-864
Cow position: chr19:23613749-23614599 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 224

Conread position: 23-864
Cow position: chr19:23614085-23614935 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 91

Conread position: 24-223
Cow position: chr19:23614926-23615125 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 24-302
Cow position: chr19:23650208-23650486 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 24-421
Cow position: chr19:14948401-14948004 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 246
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 24-487
Cow position: chr19:20635483-20635020 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 63

Conread position: 24-627
Cow position: chr19:23597095-23597698 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-628
Cow position: chr19:43570242-43569642 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 24-633
Cow position: chr19:23649788-23650397 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-794
Cow position: chr19:14959587-14958823 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 24-841
Cow position: chr19:14940222-14941048 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 505

Conread position: 24-861
Cow position: chr19:23649536-23650382 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 307

Conread position: 24-864
Cow position: chr19:14940138-14940987 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 611, 687

Conread position: 24-864
Cow position: chr19:23613582-23614431 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 37

Conread position: 24-864
Cow position: chr19:23613918-23614767 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 88

Conread position: 27-859
Cow position: chr19:23596849-23597687 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 608, 184

Conread position: 30-849
Cow position: chr19:20677939-20678764 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 75

Conread position: 32-629
Cow position: chr19:20635644-20635046 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 80

Conread position: 43-830
Cow position: chr19:20677698-20678496 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 216

Conread position: 44-864
Cow position: chr19:14939988-14940819 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 669

Conread position: 45-561
Cow position: chr19:20635546-20635030 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 120

Conread position: 45-633
Cow position: chr19:14960472-14959886 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 0

Conread position: 45-633
Cow position: chr19:43570379-43569801 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 105

Conread position: 45-829
Cow position: chr19:20677534-20678327 (view UCSC Genome Browser custom track)
Alignm length: 796
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 208

Conread position: 45-861
Cow position: chr19:23649305-23650130 (view UCSC Genome Browser custom track)
Alignm length: 827
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 601, 666

Conread position: 45-864
Cow position: chr19:23613351-23614179 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 196

Conread position: 48-856
Cow position: chr19:20677453-20678270 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 132

Conread position: 58-829
Cow position: chr19:20677379-20678159 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 65-864
Cow position: chr19:14959712-14958921 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 51

Conread position: 104-618
Cow position: chr19:43570246-43569732 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 108-602
Cow position: chr19:14948484-14947992 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 111-864
Cow position: chr19:23596849-23597608 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 137

Conread position: 115-588
Cow position: chr19:14915951-14916420 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 300
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 24

Conread position: 121-864
Cow position: chr19:23649297-23650049 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 63

Conread position: 123-834
Cow position: chr19:20677360-20678080 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 429
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 140, 125

Conread position: 128-861
Cow position: chr19:23613350-23614092 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 394

Conread position: 191-607
Cow position: chr19:14948485-14948070 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 198-814
Cow position: chr19:20635645-20635020 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 246

Conread position: 210-861
Cow position: chr19:14960475-14959817 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 326

Conread position: 224-859
Cow position: chr19:43570451-43569818 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 54

Conread position: 232-851
Cow position: chr19:20677304-20677929 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 374
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 408, 55

Conread position: 268-859
Cow position: chr19:23596838-23597435 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 195

Conread position: 280-633
Cow position: chr19:14948480-14948128 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 226, 81

Conread position: 320-864
Cow position: chr19:14960449-14959898 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 390

Conread position: 339-861
Cow position: chr19:23596825-23597353 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 210

Conread position: 372-831
Cow position: chr19:20635639-20635171 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 292
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 227, 218

Conread position: 373-862
Cow position: chr19:23613343-23613841 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 308
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 258, 338

Conread position: 377-864
Cow position: chr19:14939987-14940483 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 313
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 258, 0

Conread position: 458-854
Cow position: chr19:14948470-14948067 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 265
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 71, 58

Conread position: 475-864
Cow position: chr19:43570452-43570065 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 245
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 55

Show alignments to all cow chromosomes.