Cow genome map

Conread name: Ss1.1-Lng1-LNG010075C11.5

Conread position: 3-628
Cow position: chr22:14442085-14442709 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 372
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 338

Conread position: 3-796
Cow position: chr22:12499165-12499967 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 630, 0

Conread position: 4-628
Cow position: chr22:12458480-12457856 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 440

Conread position: 6-864
Cow position: chr22:12431777-12430911 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 13

Conread position: 8-796
Cow position: chr22:12476088-12475292 (view UCSC Genome Browser custom track)
Alignm length: 801
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 11

Conread position: 8-860
Cow position: chr22:12499087-12499947 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 11

Conread position: 8-863
Cow position: chr22:12399627-12398764 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 13

Conread position: 8-864
Cow position: chr22:12476340-12475476 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 11

Conread position: 8-864
Cow position: chr22:12498919-12499783 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 9-541
Cow position: chr22:12399292-12398759 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 10-537
Cow position: chr22:12418977-12418450 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-298
Cow position: chr22:12385196-12384908 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 18-861
Cow position: chr22:12476247-12475395 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 98

Conread position: 18-864
Cow position: chr22:12431934-12431079 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 615, 675

Conread position: 19-469
Cow position: chr22:12418884-12418434 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-554
Cow position: chr22:12458297-12457762 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 258

Conread position: 19-582
Cow position: chr22:12431177-12430614 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 247

Conread position: 19-628
Cow position: chr22:12431261-12430652 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-633
Cow position: chr22:12475910-12475296 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 97

Conread position: 19-864
Cow position: chr22:12431681-12430827 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 614, 692

Conread position: 19-864
Cow position: chr22:12432101-12431247 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 21-545
Cow position: chr22:12431091-12430567 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 332

Conread position: 21-811
Cow position: chr22:14430129-14430926 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 483
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 78, 23

Conread position: 23-220
Cow position: chr22:11641257-11641454 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 182, 177

Conread position: 23-459
Cow position: chr22:12399193-12398757 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-557
Cow position: chr22:46654328-46654863 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 64

Conread position: 23-558
Cow position: chr22:12475822-12475287 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 152

Conread position: 23-558
Cow position: chr22:12499437-12499972 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 152

Conread position: 23-629
Cow position: chr22:14430297-14430903 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 367
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 170, 160

Conread position: 23-633
Cow position: chr22:12385521-12384909 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 154

Conread position: 23-633
Cow position: chr22:12431341-12430731 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 159

Conread position: 23-633
Cow position: chr22:46654160-46654770 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 376
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 75, 64

Conread position: 23-847
Cow position: chr22:12432181-12431348 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 159

Conread position: 23-864
Cow position: chr22:12399781-12398931 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 612, 688

Conread position: 24-386
Cow position: chr22:11701333-11701695 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 70

Conread position: 24-473
Cow position: chr22:11666511-11666960 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 295
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 83, 70

Conread position: 24-492
Cow position: chr22:12544813-12545281 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 284
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 37

Conread position: 24-553
Cow position: chr22:11701165-11701694 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 71

Conread position: 24-557
Cow position: chr22:11640922-11641455 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 71

Conread position: 24-625
Cow position: chr22:12419232-12418614 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 24-627
Cow position: chr22:12399360-12398757 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 483

Conread position: 24-628
Cow position: chr22:11640838-11641442 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 235

Conread position: 24-628
Cow position: chr22:12432432-12431828 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 160

Conread position: 24-629
Cow position: chr22:11640754-11641359 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 91

Conread position: 24-633
Cow position: chr22:12385604-12384993 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 24-633
Cow position: chr22:12475989-12475380 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 7

Conread position: 24-789
Cow position: chr22:12399528-12398754 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 609, 687

Conread position: 24-833
Cow position: chr22:14429710-14430528 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 17

Conread position: 24-861
Cow position: chr22:12432012-12431166 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 238

Conread position: 24-862
Cow position: chr22:12432264-12431417 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 92

Conread position: 25-832
Cow position: chr22:14429624-14430443 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 39

Conread position: 25-864
Cow position: chr22:12458627-12457779 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 237

Conread position: 29-585
Cow position: chr22:14468044-14468600 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 349
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 238, 218

Conread position: 33-486
Cow position: chr22:14430475-14430928 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 279
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 53

Conread position: 45-466
Cow position: chr22:12385329-12384908 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 53

Conread position: 45-604
Cow position: chr22:46654266-46654825 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 275

Conread position: 45-841
Cow position: chr22:14429983-14430788 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 217

Conread position: 46-589
Cow position: chr22:14467977-14468520 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 136

Conread position: 46-627
Cow position: chr22:14441962-14442543 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 350
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 233, 206

Conread position: 46-633
Cow position: chr22:12385666-12385077 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 8

Conread position: 46-799
Cow position: chr22:11640692-11641454 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 154

Conread position: 46-861
Cow position: chr22:12432494-12431670 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 585, 681

Conread position: 50-864
Cow position: chr22:12399838-12399015 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 585, 661

Conread position: 53-557
Cow position: chr22:11666456-11666960 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 125

Conread position: 53-629
Cow position: chr22:11701110-11701686 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 57-863
Cow position: chr22:11640619-11641434 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 68

Conread position: 58-860
Cow position: chr22:12498800-12499611 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 60-631
Cow position: chr22:12419011-12418441 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 568, 0

Conread position: 60-856
Cow position: chr22:46654029-46654834 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 26

Conread position: 60-860
Cow position: chr22:12498886-12499695 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 115

Conread position: 60-864
Cow position: chr22:12431808-12430995 (view UCSC Genome Browser custom track)
Alignm length: 817
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 571, 653

Conread position: 60-864
Cow position: chr22:12476373-12475560 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 115

Conread position: 109-864
Cow position: chr22:12419315-12418534 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 619

Conread position: 119-833
Cow position: chr22:46654004-46654727 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 433
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 225, 221

Conread position: 125-830
Cow position: chr22:14441957-14442668 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 434
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 226, 215

Conread position: 126-860
Cow position: chr22:12476391-12475648 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 507, 0

Conread position: 126-861
Cow position: chr22:12432498-12431754 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 37

Conread position: 138-618
Cow position: chr22:11666457-11666937 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 124

Conread position: 138-633
Cow position: chr22:11701111-11701606 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 197

Conread position: 142-628
Cow position: chr22:12419013-12418527 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 144-634
Cow position: chr22:14441892-14442382 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 286
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 21

Conread position: 177-824
Cow position: chr22:12385703-12385045 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 33

Conread position: 183-829
Cow position: chr22:14468030-14468684 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 405
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 77, 64

Conread position: 198-502
Cow position: chr22:14430724-14431021 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 264, 201

Conread position: 198-826
Cow position: chr22:14467961-14468598 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 389
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 49

Conread position: 204-861
Cow position: chr22:12544909-12545566 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 390
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 234, 228

Conread position: 215-864
Cow position: chr22:12399841-12399183 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 105

Conread position: 224-861
Cow position: chr22:11640618-11641264 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 69

Conread position: 225-633
Cow position: chr22:11666460-11666868 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 118

Conread position: 276-586
Cow position: chr22:12544477-12544787 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 198
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 50

Conread position: 276-861
Cow position: chr22:12476409-12475815 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 435

Conread position: 276-861
Cow position: chr22:12498850-12499444 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 436

Conread position: 285-863
Cow position: chr22:46654002-46654589 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 358
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 59, 55

Conread position: 306-554
Cow position: chr22:12544591-12544839 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 324-829
Cow position: chr22:14429510-14430020 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 313
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 9

Conread position: 336-857
Cow position: chr22:12385712-12385180 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 328
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 253, 267

Conread position: 360-829
Cow position: chr22:14467955-14468433 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 296
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 9, 23

Conread position: 360-864
Cow position: chr22:12498850-12499363 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 351

Conread position: 438-864
Cow position: chr22:12458634-12458199 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 269

Conread position: 452-837
Cow position: chr22:12432507-12432114 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 179, 9

Conread position: 475-864
Cow position: chr22:12498797-12499195 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 32, 22

Show alignments to all cow chromosomes.