Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 4-385 |
| Cow position: | chr23:24560510-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 8-219 |
| Cow position: | chr23:24654166-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 167, 11 |
| Conread position: | 8-372 |
| Cow position: | chr23:24560421-24560058 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 309, 16 |
| Conread position: | 18-534 |
| Cow position: | chr23:25626508-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 69 |
| Conread position: | 18-541 |
| Cow position: | chr23:24535987-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 414 |
| Conread position: | 18-649 |
| Cow position: | chr23:24547272-24546640 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 153 |
| Conread position: | 18-864 |
| Cow position: | chr23:25626088-25626940 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 19-422 |
| Cow position: | chr23:25660294-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 19-508 |
| Cow position: | chr23:24535902-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 0 |
| Conread position: | 20-624 |
| Cow position: | chr23:25698680-25698077 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 23-302 |
| Cow position: | chr23:25626762-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-308 |
| Cow position: | chr23:24626455-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 23-385 |
| Cow position: | chr23:25626678-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 23-536 |
| Cow position: | chr23:24522670-24522160 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 23-627 |
| Cow position: | chr23:25626429-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 23-842 |
| Cow position: | chr23:24639279-24640107 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 24-228 |
| Cow position: | chr23:24626540-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-385 |
| Cow position: | chr23:24626372-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-555 |
| Cow position: | chr23:25660215-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-621 |
| Cow position: | chr23:24560658-24560061 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 224 |
| Conread position: | 24-625 |
| Cow position: | chr23:25626346-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 189 |
| Conread position: | 25-864 |
| Cow position: | chr23:24639197-24640045 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 401 |
| Conread position: | 29-373 |
| Cow position: | chr23:25724058-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 29-420 |
| Cow position: | chr23:24654102-24654487 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 92, 87 |
| Conread position: | 29-628 |
| Cow position: | chr23:24560821-24560222 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 219 |
| Conread position: | 44-629 |
| Cow position: | chr23:24522815-24522235 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 44-864 |
| Cow position: | chr23:25626028-25626856 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 362 |
| Conread position: | 45-488 |
| Cow position: | chr23:24626309-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 45-861 |
| Cow position: | chr23:25626199-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 48-633 |
| Cow position: | chr23:24560718-24560133 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 200 |
| Conread position: | 56-625 |
| Cow position: | chr23:24536033-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-629 |
| Cow position: | chr23:25660163-25660736 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 202 |
| Conread position: | 57-375 |
| Cow position: | chr23:24654046-24654364 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 57-800 |
| Cow position: | chr23:24560877-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 64-458 |
| Cow position: | chr23:25724107-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 65-633 |
| Cow position: | chr23:24547309-24546741 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 98-560 |
| Cow position: | chr23:24626278-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 105-629 |
| Cow position: | chr23:24536068-24535544 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-633 |
| Cow position: | chr23:25660134-25660656 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 119-864 |
| Cow position: | chr23:24560899-24560145 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 583 |
| Conread position: | 120-589 |
| Cow position: | chr23:24522657-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 124-627 |
| Cow position: | chr23:25698660-25698157 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 352 |
| Conread position: | 128-797 |
| Cow position: | chr23:24547330-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 138-491 |
| Cow position: | chr23:24654043-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-541 |
| Cow position: | chr23:25724116-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 297, 291 |
| Conread position: | 183-633 |
| Cow position: | chr23:25698685-25698235 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 191-585 |
| Cow position: | chr23:24522070-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 312, 100 |
| Conread position: | 192-859 |
| Cow position: | chr23:25626010-25626683 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 228 |
| Conread position: | 199-864 |
| Cow position: | chr23:24560903-24560229 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 512 |
| Conread position: | 206-627 |
| Cow position: | chr23:24626302-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 206-633 |
| Cow position: | chr23:24536051-24535624 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 320 |
| Conread position: | 212-864 |
| Cow position: | chr23:24547330-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 501 |
| Conread position: | 228-633 |
| Cow position: | chr23:25625962-25626367 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 232-864 |
| Cow position: | chr23:25724107-25723469 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 262-633 |
| Cow position: | chr23:24626274-24626645 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 275-864 |
| Cow position: | chr23:24560911-24560313 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 197 |
| Conread position: | 305-628 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-864 |
| Cow position: | chr23:24522815-24522327 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 260, 25 |
| Conread position: | 396-629 |
| Cow position: | chr23:25724111-25723878 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 458-864 |
| Cow position: | chr23:24626302-24626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 253 |
| Conread position: | 460-861 |
| Cow position: | chr23:25724131-25723721 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 251 |
| Conread position: | 702-864 |
| Cow position: | chr23:24654112-24654274 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.