Cow genome map

Conread name: Ss1.1-Lng1-LNG010075C11.5

Conread position: 1-462
Cow position:
Alignm length: 466
Alignm identity: 301
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 252, 8

Conread position: 1-520
Cow position:
Alignm length: 523
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 5

Conread position: 1-859
Cow position:
Alignm length: 873
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 5

Conread position: 3-864
Cow position:
Alignm length: 874
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 245

Conread position: 4-541
Cow position:
Alignm length: 541
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 120

Conread position: 6-786
Cow position:
Alignm length: 791
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 627, 149

Conread position: 7-626
Cow position:
Alignm length: 627
Alignm identity: 373
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 71, 7

Conread position: 7-633
Cow position:
Alignm length: 630
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 8-250
Cow position:
Alignm length: 244
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 9-633
Cow position:
Alignm length: 631
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 15

Conread position: 10-534
Cow position:
Alignm length: 528
Alignm identity: 312
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 76, 83

Conread position: 10-629
Cow position:
Alignm length: 622
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 76

Conread position: 15-856
Cow position:
Alignm length: 856
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 232

Conread position: 18-549
Cow position:
Alignm length: 534
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 18-627
Cow position:
Alignm length: 612
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 86

Conread position: 20-377
Cow position:
Alignm length: 362
Alignm identity: 226
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 172, 162

Conread position: 22-625
Cow position:
Alignm length: 605
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 219

Conread position: 22-864
Cow position:
Alignm length: 856
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 224

Conread position: 23-303
Cow position:
Alignm length: 285
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 73

Conread position: 23-385
Cow position:
Alignm length: 365
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 82

Conread position: 23-421
Cow position:
Alignm length: 399
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-471
Cow position:
Alignm length: 451
Alignm identity: 282
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 71, 63

Conread position: 23-497
Cow position:
Alignm length: 477
Alignm identity: 298
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 98, 92

Conread position: 23-546
Cow position:
Alignm length: 527
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 234

Conread position: 23-556
Cow position:
Alignm length: 536
Alignm identity: 326
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 156, 103

Conread position: 23-627
Cow position:
Alignm length: 605
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-628
Cow position:
Alignm length: 608
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 224

Conread position: 23-840
Cow position:
Alignm length: 823
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 93

Conread position: 24-317
Cow position:
Alignm length: 294
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 24-343
Cow position:
Alignm length: 321
Alignm identity: 214
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 97, 92

Conread position: 24-396
Cow position:
Alignm length: 375
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 37

Conread position: 24-474
Cow position:
Alignm length: 452
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 375

Conread position: 24-475
Cow position:
Alignm length: 452
Alignm identity: 272
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 24-486
Cow position:
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 0

Conread position: 24-589
Cow position:
Alignm length: 568
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 62

Conread position: 24-626
Cow position:
Alignm length: 608
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 100

Conread position: 24-628
Cow position:
Alignm length: 608
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 240

Conread position: 24-628
Cow position:
Alignm length: 612
Alignm identity: 376
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 82, 212

Conread position: 24-633
Cow position:
Alignm length: 611
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 230

Conread position: 24-802
Cow position:
Alignm length: 791
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 75

Conread position: 24-823
Cow position:
Alignm length: 813
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 154

Conread position: 24-829
Cow position:
Alignm length: 818
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 616, 685

Conread position: 24-857
Cow position:
Alignm length: 841
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 217

Conread position: 24-862
Cow position:
Alignm length: 851
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 484

Conread position: 26-627
Cow position:
Alignm length: 605
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 14

Conread position: 27-798
Cow position:
Alignm length: 789
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 20

Conread position: 28-252
Cow position:
Alignm length: 225
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 32-493
Cow position:
Alignm length: 466
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 42-586
Cow position:
Alignm length: 550
Alignm identity: 342
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 5, 74

Conread position: 43-863
Cow position:
Alignm length: 836
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 41

Conread position: 44-830
Cow position:
Alignm length: 799
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 44-864
Cow position:
Alignm length: 833
Alignm identity: 500
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 41, 50

Conread position: 45-305
Cow position:
Alignm length: 262
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 76

Conread position: 45-458
Cow position:
Alignm length: 414
Alignm identity: 250
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 45-476
Cow position:
Alignm length: 434
Alignm identity: 268
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 75, 69

Conread position: 45-541
Cow position:
Alignm length: 497
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 45-616
Cow position:
Alignm length: 575
Alignm identity: 343
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 139

Conread position: 45-627
Cow position:
Alignm length: 585
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 163

Conread position: 45-628
Cow position:
Alignm length: 584
Alignm identity: 347
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 45-628
Cow position:
Alignm length: 586
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 130

Conread position: 45-842
Cow position:
Alignm length: 811
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 471, 481

Conread position: 45-864
Cow position:
Alignm length: 837
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 133

Conread position: 46-289
Cow position:
Alignm length: 245
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 70

Conread position: 46-626
Cow position:
Alignm length: 582
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 46-861
Cow position:
Alignm length: 820
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 101

Conread position: 47-472
Cow position:
Alignm length: 428
Alignm identity: 252
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 146, 133

Conread position: 47-621
Cow position:
Alignm length: 579
Alignm identity: 340
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 56

Conread position: 47-829
Cow position:
Alignm length: 788
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 209

Conread position: 51-391
Cow position:
Alignm length: 344
Alignm identity: 222
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 103

Conread position: 51-860
Cow position:
Alignm length: 824
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 79

Conread position: 57-824
Cow position:
Alignm length: 784
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 25

Conread position: 58-851
Cow position:
Alignm length: 808
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 104

Conread position: 59-503
Cow position:
Alignm length: 445
Alignm identity: 258
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 59-842
Cow position:
Alignm length: 802
Alignm identity: 488
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 144, 103

Conread position: 60-569
Cow position:
Alignm length: 510
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-856
Cow position:
Alignm length: 804
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 56

Conread position: 65-604
Cow position:
Alignm length: 541
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 442

Conread position: 66-626
Cow position:
Alignm length: 562
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 368

Conread position: 99-434
Cow position:
Alignm length: 340
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 81

Conread position: 104-382
Cow position:
Alignm length: 280
Alignm identity: 176
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 111-352
Cow position:
Alignm length: 246
Alignm identity: 168
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 14

Conread position: 115-598
Cow position:
Alignm length: 488
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 119-633
Cow position:
Alignm length: 515
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-861
Cow position:
Alignm length: 754
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 518, 571

Conread position: 123-562
Cow position:
Alignm length: 440
Alignm identity: 266
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 280, 0

Conread position: 125-633
Cow position:
Alignm length: 509
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 126-629
Cow position:
Alignm length: 507
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 120

Conread position: 128-451
Cow position:
Alignm length: 326
Alignm identity: 206
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 134

Conread position: 128-478
Cow position:
Alignm length: 351
Alignm identity: 219
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 332, 0

Conread position: 128-541
Cow position:
Alignm length: 414
Alignm identity: 246
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 129-534
Cow position:
Alignm length: 407
Alignm identity: 250
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 133, 120

Conread position: 129-842
Cow position:
Alignm length: 728
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 80

Conread position: 130-628
Cow position:
Alignm length: 499
Alignm identity: 306
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 131-556
Cow position:
Alignm length: 427
Alignm identity: 262
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 145, 133

Conread position: 131-628
Cow position:
Alignm length: 499
Alignm identity: 295
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 277, 286

Conread position: 159-631
Cow position:
Alignm length: 474
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 367

Conread position: 176-619
Cow position:
Alignm length: 447
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 88, 78

Conread position: 183-514
Cow position:
Alignm length: 336
Alignm identity: 216
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 135, 182

Conread position: 183-609
Cow position:
Alignm length: 429
Alignm identity: 273
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 311, 20

Conread position: 184-614
Cow position:
Alignm length: 431
Alignm identity: 269
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 110, 0

Conread position: 192-419
Cow position:
Alignm length: 228
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 192-628
Cow position:
Alignm length: 440
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 17

Conread position: 195-864
Cow position:
Alignm length: 690
Alignm identity: 418
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 321, 331

Conread position: 196-618
Cow position:
Alignm length: 425
Alignm identity: 266
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 119, 13

Conread position: 196-829
Cow position:
Alignm length: 649
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 10

Conread position: 209-862
Cow position:
Alignm length: 665
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 493

Conread position: 210-633
Cow position:
Alignm length: 424
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 212-542
Cow position:
Alignm length: 332
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 103, 108

Conread position: 213-863
Cow position:
Alignm length: 675
Alignm identity: 421
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 206, 327

Conread position: 213-864
Cow position:
Alignm length: 664
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 80

Conread position: 216-466
Cow position:
Alignm length: 253
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 193, 206

Conread position: 225-864
Cow position:
Alignm length: 650
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 24

Conread position: 227-531
Cow position:
Alignm length: 305
Alignm identity: 200
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 233-633
Cow position:
Alignm length: 401
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 234-625
Cow position:
Alignm length: 394
Alignm identity: 241
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 28, 12

Conread position: 260-633
Cow position:
Alignm length: 377
Alignm identity: 240
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 72

Conread position: 278-566
Cow position:
Alignm length: 289
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 279-864
Cow position:
Alignm length: 599
Alignm identity: 356
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 82, 55

Conread position: 288-823
Cow position:
Alignm length: 547
Alignm identity: 338
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 345, 423

Conread position: 296-628
Cow position:
Alignm length: 334
Alignm identity: 201
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 187, 194

Conread position: 298-828
Cow position:
Alignm length: 543
Alignm identity: 328
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 22

Conread position: 311-613
Cow position:
Alignm length: 303
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 311-628
Cow position:
Alignm length: 320
Alignm identity: 198
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 127, 121

Conread position: 314-864
Cow position:
Alignm length: 562
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 199

Conread position: 315-864
Cow position:
Alignm length: 564
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 382-626
Cow position:
Alignm length: 245
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 383-628
Cow position:
Alignm length: 246
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 402-864
Cow position:
Alignm length: 474
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 142

Conread position: 447-861
Cow position:
Alignm length: 426
Alignm identity: 268
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 55

Conread position: 456-864
Cow position:
Alignm length: 420
Alignm identity: 257
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 180, 237

Conread position: 485-864
Cow position:
Alignm length: 392
Alignm identity: 249
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 47, 54

Conread position: 709-864
Cow position:
Alignm length: 156
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.