Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 6-864 |
| Cow position: | chr28:7757462-7758328 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 629, 17 |
| Conread position: | 12-561 |
| Cow position: | chr28:7810400-7810939 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 7 |
| Conread position: | 19-864 |
| Cow position: | chr28:11334079-11333225 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 20-302 |
| Cow position: | chr28:9253330-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-397 |
| Cow position: | chr28:7810566-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 20-422 |
| Cow position: | chr28:9290229-9290627 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 23-389 |
| Cow position: | chr28:33210290-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 90 |
| Conread position: | 23-394 |
| Cow position: | chr28:9290314-9290683 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 236, 61 |
| Conread position: | 23-419 |
| Cow position: | chr28:34679498-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 23-420 |
| Cow position: | chr28:9253249-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 23-627 |
| Cow position: | chr28:7758150-7758738 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 155 |
| Conread position: | 23-798 |
| Cow position: | chr28:9298796-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 18 |
| Conread position: | 23-859 |
| Cow position: | chr28:7757730-7758559 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 24-373 |
| Cow position: | chr28:34696227-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 24-491 |
| Cow position: | chr28:7758387-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 409, 385 |
| Conread position: | 24-554 |
| Cow position: | chr28:9253082-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 154 |
| Conread position: | 24-633 |
| Cow position: | chr28:34695891-34696500 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 28-822 |
| Cow position: | chr28:11334154-11333357 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 149 |
| Conread position: | 45-473 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 45-627 |
| Cow position: | chr28:34695996-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 45-628 |
| Cow position: | chr28:9253019-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 134 |
| Conread position: | 45-824 |
| Cow position: | chr28:7757416-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 46-808 |
| Cow position: | chr28:34695829-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 47-856 |
| Cow position: | chr28:7757334-7758152 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 131 |
| Conread position: | 57-554 |
| Cow position: | chr28:7758336-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 115, 121 |
| Conread position: | 58-617 |
| Cow position: | chr28:34673368-34673927 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 122 |
| Conread position: | 64-483 |
| Cow position: | chr28:7810526-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 183 |
| Conread position: | 64-619 |
| Cow position: | chr28:7810283-7810829 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 348 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 189, 198 |
| Conread position: | 108-633 |
| Cow position: | chr28:9290067-9290586 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 108-830 |
| Cow position: | chr28:9298631-9299343 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 111-629 |
| Cow position: | chr28:7758307-7758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 125-557 |
| Cow position: | chr28:33210223-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 127-511 |
| Cow position: | chr28:34673353-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 165-589 |
| Cow position: | chr28:34679607-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 173-864 |
| Cow position: | chr28:7757214-7757908 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 427 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 186-864 |
| Cow position: | chr28:9252741-9253427 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 192-811 |
| Cow position: | chr28:7810327-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 197-800 |
| Cow position: | chr28:9253003-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 514 |
| Conread position: | 197-861 |
| Cow position: | chr28:9289900-9290571 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 410 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 209-626 |
| Cow position: | chr28:33210223-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 218 |
| Conread position: | 210-864 |
| Cow position: | chr28:9252932-9253595 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 216-864 |
| Cow position: | chr28:7757335-7757992 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 232-829 |
| Cow position: | chr28:7810283-7810880 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 376 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 280-594 |
| Cow position: | chr28:34673422-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 285-629 |
| Cow position: | chr28:34679570-34679225 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 293-629 |
| Cow position: | chr28:33210223-33210560 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 295-565 |
| Cow position: | chr28:34673353-34673623 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-633 |
| Cow position: | chr28:33210228-33210480 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 382-589 |
| Cow position: | chr28:34673356-34673563 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 146 |
Show alignments to all cow chromosomes.