Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 11-598 |
| Cow position: | chr3:68027141-68027729 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 503 |
| Conread position: | 19-302 |
| Cow position: | chr3:62721847-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-629 |
| Cow position: | chr3:62722183-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 238 |
| Conread position: | 20-633 |
| Cow position: | chr3:68045660-68046273 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 227 |
| Conread position: | 22-627 |
| Cow position: | chr3:68045746-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-357 |
| Cow position: | chr3:68027406-68027740 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-553 |
| Cow position: | chr3:62742924-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 342 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 504, 81 |
| Conread position: | 23-618 |
| Cow position: | chr3:62742755-62743329 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 250 |
| Conread position: | 23-633 |
| Cow position: | chr3:62742839-62743428 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 382 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 23-861 |
| Cow position: | chr3:62742424-62743245 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 216 |
| Conread position: | 24-496 |
| Cow position: | chr3:77351094-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 24-534 |
| Cow position: | chr3:20194785-20195295 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 169, 163 |
| Conread position: | 29-633 |
| Cow position: | chr3:62722257-62721653 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-619 |
| Cow position: | chr3:62742353-62742932 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 221 |
| Conread position: | 41-619 |
| Cow position: | chr3:77351161-77350593 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 45-633 |
| Cow position: | chr3:68027092-68027680 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 474 |
| Conread position: | 47-797 |
| Cow position: | chr3:62722323-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 47-801 |
| Cow position: | chr3:68027010-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 664 |
| Conread position: | 48-595 |
| Cow position: | chr3:68045605-68046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 51-626 |
| Cow position: | chr3:20194728-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 353 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 209, 195 |
| Conread position: | 64-809 |
| Cow position: | chr3:77351305-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 460 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 65-511 |
| Cow position: | chr3:62743033-62743474 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 100-863 |
| Cow position: | chr3:68045572-68046345 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 331 |
| Conread position: | 117-863 |
| Cow position: | chr3:62722338-62721582 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 186-864 |
| Cow position: | chr3:62742252-62742934 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 102 |
| Conread position: | 192-864 |
| Cow position: | chr3:62722346-62721665 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 261-864 |
| Cow position: | chr3:62722361-62721749 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 282-861 |
| Cow position: | chr3:68026993-68027581 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 115, 110 |
| Conread position: | 303-628 |
| Cow position: | chr3:20194728-20195053 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 690-864 |
| Cow position: | chr3:16020397-16020223 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.