Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 11-864 |
| Cow position: | chr6:49340369-49341232 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 701 |
| Conread position: | 13-343 |
| Cow position: | chr6:49341128-49341456 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 0 |
| Conread position: | 13-829 |
| Cow position: | chr6:49340624-49341448 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 228 |
| Conread position: | 18-860 |
| Cow position: | chr6:49340545-49341396 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 171 |
| Conread position: | 18-864 |
| Cow position: | chr6:49340461-49341316 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 225 |
| Conread position: | 21-247 |
| Cow position: | chr6:49396773-49396999 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 21-392 |
| Cow position: | chr6:49396605-49396976 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-524 |
| Cow position: | chr6:49429044-49429543 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 21-823 |
| Cow position: | chr6:49428540-49429351 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 243 |
| Conread position: | 21-848 |
| Cow position: | chr6:49395939-49396769 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 490 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 24-489 |
| Cow position: | chr6:49396524-49396991 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 24-627 |
| Cow position: | chr6:49396356-49396959 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 90 |
| Conread position: | 24-633 |
| Cow position: | chr6:49396272-49396881 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 27-843 |
| Cow position: | chr6:49396031-49396848 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 17 |
| Conread position: | 35-520 |
| Cow position: | chr6:49361844-49362322 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 307, 53 |
| Conread position: | 44-628 |
| Cow position: | chr6:49428311-49428895 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 401 |
| Conread position: | 44-633 |
| Cow position: | chr6:49428899-49429488 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 233 |
| Conread position: | 44-864 |
| Cow position: | chr6:49428395-49429224 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 45-579 |
| Cow position: | chr6:49428984-49429516 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 45-586 |
| Cow position: | chr6:49362099-49362628 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 339 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 45-628 |
| Cow position: | chr6:49428816-49429399 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 45-633 |
| Cow position: | chr6:49428732-49429320 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 135 |
| Conread position: | 47-823 |
| Cow position: | chr6:49428230-49429015 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 120-619 |
| Cow position: | chr6:49362330-49362817 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 191-861 |
| Cow position: | chr6:49395941-49396614 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 417 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 202-842 |
| Cow position: | chr6:49361921-49362557 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 224, 8 |
| Conread position: | 236-861 |
| Cow position: | chr6:49395818-49396446 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 379 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 255-841 |
| Cow position: | chr6:49340362-49340957 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 456 |
| Conread position: | 378-840 |
| Cow position: | chr6:49428224-49428696 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 6, 191 |
Show alignments to all cow chromosomes.