Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010075C11.5 |
| Conread position: | 1-625 |
| Cow position: | chr7:42878898-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 5 |
| Conread position: | 3-533 |
| Cow position: | chr7:28846549-28847079 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 6-554 |
| Cow position: | chr7:42878810-42878262 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 13 |
| Conread position: | 6-864 |
| Cow position: | chr7:42879146-42878280 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 13 |
| Conread position: | 6-864 |
| Cow position: | chr7:42879230-42878364 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 629, 13 |
| Conread position: | 10-418 |
| Cow position: | chr7:1439857-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 247, 11 |
| Conread position: | 19-861 |
| Cow position: | chr7:3179923-3180774 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 240 |
| Conread position: | 20-587 |
| Cow position: | chr7:1439700-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 21-508 |
| Cow position: | chr7:11434756-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 21-586 |
| Cow position: | chr7:8277404-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 247, 232 |
| Conread position: | 23-268 |
| Cow position: | chr7:18390560-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 232, 224 |
| Conread position: | 23-413 |
| Cow position: | chr7:1438311-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 134, 152 |
| Conread position: | 23-419 |
| Cow position: | chr7:18390392-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 23-504 |
| Cow position: | chr7:8325635-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 170, 153 |
| Conread position: | 23-558 |
| Cow position: | chr7:1014917-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 499 |
| Conread position: | 23-586 |
| Cow position: | chr7:8243448-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 246, 231 |
| Conread position: | 23-589 |
| Cow position: | chr7:8277910-8278474 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 351 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 23-625 |
| Cow position: | chr7:3180263-3180864 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 218 |
| Conread position: | 23-627 |
| Cow position: | chr7:18390140-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 23-629 |
| Cow position: | chr7:11601209-11600603 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 23-633 |
| Cow position: | chr7:3180179-3180789 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 224 |
| Conread position: | 23-829 |
| Cow position: | chr7:8243197-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 486 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 23-830 |
| Cow position: | chr7:8324879-8325695 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 70 |
| Conread position: | 23-859 |
| Cow position: | chr7:1014419-1015258 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 23-864 |
| Cow position: | chr7:1014335-1015179 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 23-864 |
| Cow position: | chr7:3179759-3180609 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 612, 731 |
| Conread position: | 24-609 |
| Cow position: | chr7:18390225-18390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-625 |
| Cow position: | chr7:11601040-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 24-633 |
| Cow position: | chr7:1014750-1015359 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 24-864 |
| Cow position: | chr7:3180012-3180860 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 687 |
| Conread position: | 26-842 |
| Cow position: | chr7:1014668-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 251 |
| Conread position: | 29-633 |
| Cow position: | chr7:8325473-8326077 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 146 |
| Conread position: | 41-824 |
| Cow position: | chr7:8277254-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 482 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 41-826 |
| Cow position: | chr7:8324727-8325523 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 43-589 |
| Cow position: | chr7:11434820-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 44-829 |
| Cow position: | chr7:42879277-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 649 |
| Conread position: | 45-530 |
| Cow position: | chr7:12293516-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-634 |
| Cow position: | chr7:28846507-28847096 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 344 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 45-864 |
| Cow position: | chr7:1014273-1015095 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 292 |
| Conread position: | 47-628 |
| Cow position: | chr7:1438085-1438664 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 210, 111 |
| Conread position: | 50-835 |
| Cow position: | chr7:8325242-8326036 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 51-591 |
| Cow position: | chr7:12293438-12293978 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 326 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 51-628 |
| Cow position: | chr7:12293270-12293847 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 217, 213 |
| Conread position: | 56-863 |
| Cow position: | chr7:3179708-3180523 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 184 |
| Conread position: | 60-826 |
| Cow position: | chr7:8277527-8278302 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 476 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 108-521 |
| Cow position: | chr7:1438312-1438725 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 241, 247 |
| Conread position: | 108-587 |
| Cow position: | chr7:1438228-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 217, 231 |
| Conread position: | 110-828 |
| Cow position: | chr7:1439451-1440178 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 448 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 116-833 |
| Cow position: | chr7:8242870-8243595 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 432 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 118-864 |
| Cow position: | chr7:1014096-1014843 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 536, 29 |
| Conread position: | 119-542 |
| Cow position: | chr7:11600861-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 220 |
| Conread position: | 121-586 |
| Cow position: | chr7:11434824-11434366 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 126 |
| Conread position: | 123-860 |
| Cow position: | chr7:1014267-1015007 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 517, 383 |
| Conread position: | 126-829 |
| Cow position: | chr7:11601190-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 128 |
| Conread position: | 129-633 |
| Cow position: | chr7:18390162-18390666 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-613 |
| Cow position: | chr7:28846446-28846907 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 116, 112 |
| Conread position: | 162-628 |
| Cow position: | chr7:12293297-12293763 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 102 |
| Conread position: | 183-864 |
| Cow position: | chr7:18390048-18390738 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 94 |
| Conread position: | 195-830 |
| Cow position: | chr7:1439452-1440096 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 399 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 242, 135 |
| Conread position: | 203-829 |
| Cow position: | chr7:42879370-42878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 205-840 |
| Cow position: | chr7:18390156-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 210-864 |
| Cow position: | chr7:42879277-42878616 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 16 |
| Conread position: | 264-864 |
| Cow position: | chr7:18390045-18390654 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 373 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 89, 81 |
| Conread position: | 280-829 |
| Cow position: | chr7:42879377-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 280-851 |
| Cow position: | chr7:11601204-11600624 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 356 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 353, 431 |
Show alignments to all cow chromosomes.