Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010111D05.5.5 |
| Conread position: | 143-425 |
| Cow position: | chr23:23096968-23096696 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 149-425 |
| Cow position: | chr23:20551142-20551409 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 149-425 |
| Cow position: | chr23:21180741-21180474 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 149-425 |
| Cow position: | chr23:23022929-23022662 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 166 |
| Conread position: | 149-425 |
| Cow position: | chr23:23049471-23049204 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 166 |
| Conread position: | 150-319 |
| Cow position: | chr23:23177852-23177683 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 416-700 |
| Cow position: | chr23:21180287-21180003 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-700 |
| Cow position: | chr23:23022459-23022176 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 114 |
| Conread position: | 416-700 |
| Cow position: | chr23:23049041-23048757 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 209 |
| Conread position: | 416-700 |
| Cow position: | chr23:23096509-23096228 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 30 |
| Conread position: | 417-700 |
| Cow position: | chr23:20551600-20551882 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 417-700 |
| Cow position: | chr23:23177323-23177038 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 483-700 |
| Cow position: | chr23:24589535-24589754 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 698-868 |
| Cow position: | chr23:23176142-23175972 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-975 |
| Cow position: | chr23:23048188-23047911 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-976 |
| Cow position: | chr23:20553184-20553462 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-976 |
| Cow position: | chr23:21000454-21000732 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-976 |
| Cow position: | chr23:21179119-21178841 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-976 |
| Cow position: | chr23:23021253-23020975 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 698-976 |
| Cow position: | chr23:23093772-23093494 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 699-976 |
| Cow position: | chr23:24591581-24591855 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 751-965 |
| Cow position: | chr23:24252953-24252736 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 976-1101 |
| Cow position: | chr23:20553571-20553700 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 976-1101 |
| Cow position: | chr23:23020859-23020734 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 976-1102 |
| Cow position: | chr23:23175802-23175682 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 53 |
| Conread position: | 976-1103 |
| Cow position: | chr23:21178724-21178599 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 976-1103 |
| Cow position: | chr23:23047794-23047665 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 976-1103 |
| Cow position: | chr23:23093378-23093250 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 976-1106 |
| Cow position: | chr23:24591966-24592091 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 1170-1320 |
| Cow position: | chr23:23046867-23046727 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1170-1369 |
| Cow position: | chr23:20554526-20554727 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 1170-1396 |
| Cow position: | chr23:21177812-21177581 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 1170-1408 |
| Cow position: | chr23:23092455-23092227 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 228, 38 |
| Conread position: | 1170-1593 |
| Cow position: | chr23:24592887-24593301 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 35 |
| Conread position: | 1484-1596 |
| Cow position: | chr23:21177486-21177375 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 36 |
Show alignments to all cow chromosomes.