Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 49

Conread position: 1-190
Cow position:
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 14

Conread position: 3-186
Cow position:
Alignm length: 186
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 112, 169

Conread position: 7-186
Cow position:
Alignm length: 189
Alignm identity: 138
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 109, 19

Conread position: 7-187
Cow position:
Alignm length: 188
Alignm identity: 138
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 7-190
Cow position:
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 59

Conread position: 9-190
Cow position:
Alignm length: 184
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 19

Conread position: 10-166
Cow position:
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 26

Conread position: 10-166
Cow position:
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 10-191
Cow position:
Alignm length: 191
Alignm identity: 140
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 93, 0

Conread position: 10-218
Cow position:
Alignm length: 218
Alignm identity: 150
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 199

Conread position: 11-190
Cow position:
Alignm length: 186
Alignm identity: 138
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 91, 13

Conread position: 12-185
Cow position:
Alignm length: 175
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 18

Conread position: 12-186
Cow position:
Alignm length: 184
Alignm identity: 140
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 142

Conread position: 12-190
Cow position:
Alignm length: 185
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 24

Conread position: 12-191
Cow position:
Alignm length: 183
Alignm identity: 145
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 102, 19

Conread position: 13-180
Cow position:
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 13-186
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 14-164
Cow position:
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 112

Conread position: 14-180
Cow position:
Alignm length: 176
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 89, 22

Conread position: 14-186
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 22

Conread position: 15-166
Cow position:
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 15-191
Cow position:
Alignm length: 182
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 129

Conread position: 15-191
Cow position:
Alignm length: 179
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 89

Conread position: 16-180
Cow position:
Alignm length: 167
Alignm identity: 136
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 91, 0

Conread position: 16-186
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 16-190
Cow position:
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 64

Conread position: 16-191
Cow position:
Alignm length: 185
Alignm identity: 144
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 100, 24

Conread position: 17-170
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 9

Conread position: 17-186
Cow position:
Alignm length: 178
Alignm identity: 135
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 23, 61

Conread position: 17-186
Cow position:
Alignm length: 170
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 17-187
Cow position:
Alignm length: 180
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 86, 25

Conread position: 17-190
Cow position:
Alignm length: 184
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 18-167
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 13

Conread position: 18-179
Cow position:
Alignm length: 167
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 18-186
Cow position:
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 0

Conread position: 18-190
Cow position:
Alignm length: 175
Alignm identity: 129
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 158, 82

Conread position: 18-190
Cow position:
Alignm length: 176
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 13

Conread position: 18-190
Cow position:
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 18

Conread position: 18-191
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 89

Conread position: 19-181
Cow position:
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 12

Conread position: 19-190
Cow position:
Alignm length: 180
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 86, 17

Conread position: 19-208
Cow position:
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 19-214
Cow position:
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 21

Conread position: 20-170
Cow position:
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 20-188
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 95, 20

Conread position: 20-190
Cow position:
Alignm length: 173
Alignm identity: 138
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 95, 69

Conread position: 21-180
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 82, 10

Conread position: 21-186
Cow position:
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 58

Conread position: 21-208
Cow position:
Alignm length: 193
Alignm identity: 141
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 93, 44

Conread position: 25-191
Cow position:
Alignm length: 168
Alignm identity: 128
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 163, 15

Conread position: 26-180
Cow position:
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 84, 10

Conread position: 26-190
Cow position:
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 10

Conread position: 26-190
Cow position:
Alignm length: 174
Alignm identity: 134
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 77, 10

Conread position: 27-180
Cow position:
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 27-187
Cow position:
Alignm length: 161
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-190
Cow position:
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 5, 78

Conread position: 27-190
Cow position:
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 28-144
Cow position:
Alignm length: 120
Alignm identity: 99
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 28-155
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 28-180
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 13, 33

Conread position: 28-205
Cow position:
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 176

Conread position: 28-214
Cow position:
Alignm length: 194
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 29-186
Cow position:
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 89

Conread position: 29-190
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 157

Conread position: 29-240
Cow position:
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 74

Conread position: 30-155
Cow position:
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 30-190
Cow position:
Alignm length: 176
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 31-186
Cow position:
Alignm length: 157
Alignm identity: 123
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 84, 72

Conread position: 31-186
Cow position:
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 31-190
Cow position:
Alignm length: 166
Alignm identity: 127
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 31-215
Cow position:
Alignm length: 192
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 32-166
Cow position:
Alignm length: 137
Alignm identity: 109
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 71, 37

Conread position: 32-180
Cow position:
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 89

Conread position: 32-180
Cow position:
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 32-181
Cow position:
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 32-186
Cow position:
Alignm length: 159
Alignm identity: 131
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 32-186
Cow position:
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 32-186
Cow position:
Alignm length: 155
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 32-186
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 32-189
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 69

Conread position: 32-190
Cow position:
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 32-190
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 32-190
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 32-190
Cow position:
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 70, 145

Conread position: 32-201
Cow position:
Alignm length: 174
Alignm identity: 137
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 80, 142

Conread position: 32-208
Cow position:
Alignm length: 179
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 155, 16

Conread position: 32-215
Cow position:
Alignm length: 196
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 180

Conread position: 33-166
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-191
Cow position:
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 33-191
Cow position:
Alignm length: 161
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 85, 0

Conread position: 35-169
Cow position:
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 35-180
Cow position:
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 36-180
Cow position:
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 36-187
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 36-190
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 36-190
Cow position:
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 36-190
Cow position:
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 67, 9

Conread position: 36-191
Cow position:
Alignm length: 161
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 36-208
Cow position:
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 171

Conread position: 37-191
Cow position:
Alignm length: 156
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 148, 66

Conread position: 38-167
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 38-180
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 38-186
Cow position:
Alignm length: 157
Alignm identity: 124
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 38-190
Cow position:
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 29

Conread position: 38-190
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 38-216
Cow position:
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 104

Conread position: 39-180
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 39-186
Cow position:
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 39-190
Cow position:
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 40-164
Cow position:
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 40-183
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 40-186
Cow position:
Alignm length: 152
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 40-190
Cow position:
Alignm length: 154
Alignm identity: 118
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 40-191
Cow position:
Alignm length: 155
Alignm identity: 122
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 41-208
Cow position:
Alignm length: 169
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 145, 25

Conread position: 43-186
Cow position:
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 45-190
Cow position:
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 46-170
Cow position:
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 46-213
Cow position:
Alignm length: 169
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 151, 65

Conread position: 48-186
Cow position:
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 48-190
Cow position:
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 48-190
Cow position:
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 50

Conread position: 48-190
Cow position:
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 139, 53

Conread position: 48-213
Cow position:
Alignm length: 173
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 159

Conread position: 49-190
Cow position:
Alignm length: 145
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 15

Conread position: 50-180
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 52-187
Cow position:
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 54-190
Cow position:
Alignm length: 141
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 55-186
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.