Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-208
Cow position: chr11:15772496-15772713 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 107, 210

Conread position: 4-166
Cow position: chr11:28078704-28078536 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 31, 6

Conread position: 4-186
Cow position: chr11:75388166-75388355 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 11

Conread position: 7-180
Cow position: chr11:75874562-75874726 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 7-190
Cow position: chr11:39462831-39462641 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 9-170
Cow position: chr11:2830864-2830695 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 18

Conread position: 9-190
Cow position: chr11:64105201-64105015 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 94, 31

Conread position: 10-180
Cow position: chr11:58186079-58185911 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 12-186
Cow position: chr11:70756682-70756500 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 12-190
Cow position: chr11:35536781-35536605 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 91, 52

Conread position: 12-214
Cow position: chr11:9699045-9699252 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 105

Conread position: 13-178
Cow position: chr11:42067067-42066895 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 18

Conread position: 13-186
Cow position: chr11:77013977-77013803 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 92

Conread position: 13-190
Cow position: chr11:49396321-49396508 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 19

Conread position: 14-179
Cow position: chr11:18483996-18484159 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 100

Conread position: 14-179
Cow position: chr11:36182897-36182724 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 68

Conread position: 15-186
Cow position: chr11:38223591-38223765 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 9

Conread position: 16-180
Cow position: chr11:15366775-15366944 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 16-184
Cow position: chr11:30211085-30210929 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 15

Conread position: 16-190
Cow position: chr11:62620576-62620394 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 22

Conread position: 16-191
Cow position: chr11:3175870-3175690 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 47

Conread position: 17-186
Cow position: chr11:18699071-18698902 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 18-189
Cow position: chr11:84764218-84764052 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 9

Conread position: 18-190
Cow position: chr11:71805966-71806133 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 168, 85

Conread position: 18-191
Cow position: chr11:30172498-30172321 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 18

Conread position: 18-211
Cow position: chr11:77241903-77241701 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 19-179
Cow position: chr11:17369722-17369560 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 17

Conread position: 19-190
Cow position: chr11:33347999-33348169 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 57

Conread position: 21-170
Cow position: chr11:82732954-82733111 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 7

Conread position: 22-179
Cow position: chr11:15949909-15950057 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 22-212
Cow position: chr11:52297026-52297226 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 23-191
Cow position: chr11:84968559-84968395 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 23-210
Cow position: chr11:83043172-83043366 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 23-217
Cow position: chr11:27461916-27462108 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 174, 80

Conread position: 24-203
Cow position: chr11:49057577-49057397 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 91, 0

Conread position: 26-186
Cow position: chr11:29978161-29978314 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 26-186
Cow position: chr11:63498939-63499107 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 26-190
Cow position: chr11:17227460-17227627 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 75, 16

Conread position: 26-190
Cow position: chr11:78820341-78820169 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 82, 113

Conread position: 26-191
Cow position: chr11:48900669-48900828 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 159, 10

Conread position: 28-164
Cow position: chr11:2937482-2937619 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 86, 0

Conread position: 28-177
Cow position: chr11:36092730-36092884 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 12

Conread position: 28-186
Cow position: chr11:9270548-9270703 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 44

Conread position: 28-186
Cow position: chr11:65607498-65607666 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 28-190
Cow position: chr11:46784654-46784492 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 93

Conread position: 28-190
Cow position: chr11:66041461-66041296 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 18

Conread position: 28-190
Cow position: chr11:80586455-80586292 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 91, 18

Conread position: 28-191
Cow position: chr11:66188131-66188300 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 88, 41

Conread position: 30-180
Cow position: chr11:38194363-38194223 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 30-180
Cow position: chr11:43360598-43360755 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 31-141
Cow position: chr11:31508090-31507976 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 32-180
Cow position: chr11:75915171-75915022 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 71, 14

Conread position: 32-186
Cow position: chr11:40818447-40818604 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 71, 16

Conread position: 32-190
Cow position: chr11:42083639-42083486 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 154, 68

Conread position: 32-191
Cow position: chr11:18572969-18572817 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 155, 71

Conread position: 33-170
Cow position: chr11:35848957-35849099 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 33-170
Cow position: chr11:63478547-63478411 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 33-186
Cow position: chr11:38639284-38639134 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 33-186
Cow position: chr11:62742464-62742623 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 7

Conread position: 33-191
Cow position: chr11:84890542-84890700 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 83

Conread position: 36-170
Cow position: chr11:3267486-3267617 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 36-170
Cow position: chr11:62789309-62789169 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 36-180
Cow position: chr11:8421943-8422089 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 36-180
Cow position: chr11:41985866-41986017 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 36-180
Cow position: chr11:62483792-62483933 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 36-190
Cow position: chr11:35276433-35276287 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 36-190
Cow position: chr11:49153122-49152967 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 82, 0

Conread position: 36-190
Cow position: chr11:67600960-67600802 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 81, 0

Conread position: 37-180
Cow position: chr11:6194569-6194427 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 84, 95

Conread position: 37-186
Cow position: chr11:45671199-45671347 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 38-154
Cow position: chr11:66104213-66104334 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 38-157
Cow position: chr11:2310247-2310127 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 38-179
Cow position: chr11:51729454-51729316 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 38-186
Cow position: chr11:41313482-41313634 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 37

Conread position: 38-190
Cow position: chr11:36647507-36647361 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 148, 37

Conread position: 38-191
Cow position: chr11:55762036-55761885 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 78, 10

Conread position: 38-211
Cow position: chr11:63485112-63484935 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 167

Conread position: 39-186
Cow position: chr11:1485055-1485204 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 39-200
Cow position: chr11:64048569-64048411 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 148, 32

Conread position: 40-166
Cow position: chr11:57170432-57170556 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 40-178
Cow position: chr11:1842135-1841994 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 40-191
Cow position: chr11:21852138-21852285 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 147, 63

Conread position: 40-211
Cow position: chr11:26535962-26535783 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 124

Conread position: 43-190
Cow position: chr11:13042973-13043128 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 48-190
Cow position: chr11:28993578-28993720 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 71

Conread position: 50-180
Cow position: chr11:73353899-73354031 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.