Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C040097.5 |
| Conread position: | 5-190 |
| Cow position: | chr12:11836423-11836231 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 7-170 |
| Cow position: | chr12:40910097-40910267 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 10-186 |
| Cow position: | chr12:1952619-1952800 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 10-186 |
| Cow position: | chr12:27802872-27803048 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 11-157 |
| Cow position: | chr12:17273752-17273602 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 11-186 |
| Cow position: | chr12:24023625-24023800 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 11-214 |
| Cow position: | chr12:11057055-11056847 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 13-190 |
| Cow position: | chr12:18582816-18582995 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 13-214 |
| Cow position: | chr12:1889395-1889606 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 15-115 |
| Cow position: | chr12:17775027-17774930 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 15-165 |
| Cow position: | chr12:40881742-40881893 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 16-186 |
| Cow position: | chr12:6958398-6958221 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 16-188 |
| Cow position: | chr12:45126682-45126847 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 16-214 |
| Cow position: | chr12:18123842-18123641 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 18-180 |
| Cow position: | chr12:33851533-33851365 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 18-196 |
| Cow position: | chr12:41684681-41684498 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 18-210 |
| Cow position: | chr12:23714854-23714653 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 192 |
| Conread position: | 19-154 |
| Cow position: | chr12:27421630-27421487 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 19-190 |
| Cow position: | chr12:1333392-1333228 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 164, 12 |
| Conread position: | 19-214 |
| Cow position: | chr12:7902626-7902826 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 20-166 |
| Cow position: | chr12:24639800-24639656 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 20-179 |
| Cow position: | chr12:7884505-7884672 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 20-180 |
| Cow position: | chr12:17701862-17702021 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 20-187 |
| Cow position: | chr12:17250678-17250513 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 20-213 |
| Cow position: | chr12:38679226-38679024 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 21-186 |
| Cow position: | chr12:34465844-34466002 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 22-180 |
| Cow position: | chr12:38774069-38774235 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 23-186 |
| Cow position: | chr12:34161576-34161415 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 27-186 |
| Cow position: | chr12:20654312-20654476 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 28-186 |
| Cow position: | chr12:18103450-18103610 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 29-191 |
| Cow position: | chr12:4801520-4801362 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 158, 74 |
| Conread position: | 31-180 |
| Cow position: | chr12:44822448-44822301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 31-190 |
| Cow position: | chr12:4769084-4768923 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 32-143 |
| Cow position: | chr12:40027759-40027872 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 32-184 |
| Cow position: | chr12:6666724-6666574 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 32-184 |
| Cow position: | chr12:37008546-37008703 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 32-186 |
| Cow position: | chr12:20776765-20776922 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 32-190 |
| Cow position: | chr12:17108319-17108156 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 32-190 |
| Cow position: | chr12:30210634-30210480 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 150, 69 |
| Conread position: | 32-191 |
| Cow position: | chr12:9229352-9229504 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 72 |
| Conread position: | 33-186 |
| Cow position: | chr12:33976366-33976201 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 33-190 |
| Cow position: | chr12:6688048-6687890 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 36-165 |
| Cow position: | chr12:42350329-42350464 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 36-180 |
| Cow position: | chr12:29731471-29731322 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 36-186 |
| Cow position: | chr12:26217667-26217822 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 36-190 |
| Cow position: | chr12:17879145-17879304 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 36-214 |
| Cow position: | chr12:40309472-40309294 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 157 |
| Conread position: | 36-214 |
| Cow position: | chr12:48578995-48578815 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 90 |
| Conread position: | 37-170 |
| Cow position: | chr12:26576051-26575914 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 38-166 |
| Cow position: | chr12:40157870-40158003 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 38-179 |
| Cow position: | chr12:5635294-5635444 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 38-180 |
| Cow position: | chr12:24181300-24181155 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 38-186 |
| Cow position: | chr12:3623849-3623696 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 38-213 |
| Cow position: | chr12:17744707-17744888 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 39-190 |
| Cow position: | chr12:33949057-33948901 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 39-208 |
| Cow position: | chr12:11587926-11587752 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 40-191 |
| Cow position: | chr12:38804446-38804594 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 63 |
| Conread position: | 40-208 |
| Cow position: | chr12:43855046-43854872 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 41-186 |
| Cow position: | chr12:48415365-48415514 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 48-178 |
| Cow position: | chr12:30194841-30194711 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 48-186 |
| Cow position: | chr12:3616131-3615999 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 49-190 |
| Cow position: | chr12:31517036-31517174 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 62 |
| Conread position: | 49-207 |
| Cow position: | chr12:18130658-18130498 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 59, 154 |
Show alignments to all cow chromosomes.