Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-179
Cow position: chr14:24845790-24845962 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 14

Conread position: 6-190
Cow position: chr14:18412781-18412584 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 7-203
Cow position: chr14:5835744-5835932 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 66

Conread position: 8-201
Cow position: chr14:47170531-47170335 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 95, 28

Conread position: 12-186
Cow position: chr14:8949470-8949652 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 13-180
Cow position: chr14:109655-109494 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 13-190
Cow position: chr14:12512069-12511890 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 102, 15

Conread position: 13-191
Cow position: chr14:26805212-26805043 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 174, 87

Conread position: 14-190
Cow position: chr14:18270181-18270368 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 14-190
Cow position: chr14:40754420-40754240 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 10

Conread position: 16-166
Cow position: chr14:21968684-21968527 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 16-170
Cow position: chr14:5044502-5044657 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 85, 15

Conread position: 16-186
Cow position: chr14:13809780-13809942 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 16-186
Cow position: chr14:16207666-16207496 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 90

Conread position: 17-186
Cow position: chr14:37152107-37151938 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 8

Conread position: 17-188
Cow position: chr14:23424091-23424265 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 78, 11

Conread position: 17-190
Cow position: chr14:47673057-47672874 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 18-142
Cow position: chr14:48485740-48485621 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 18-176
Cow position: chr14:36289965-36289806 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 29

Conread position: 18-180
Cow position: chr14:20110895-20110726 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 22

Conread position: 18-180
Cow position: chr14:35421260-35421086 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 27

Conread position: 18-180
Cow position: chr14:36151150-36151321 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 18-186
Cow position: chr14:21357384-21357560 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 18

Conread position: 18-186
Cow position: chr14:29723750-29723585 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 18-188
Cow position: chr14:23442852-23443026 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 77, 127

Conread position: 18-190
Cow position: chr14:24785481-24785665 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 18-190
Cow position: chr14:41267897-41267725 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 169, 94

Conread position: 19-186
Cow position: chr14:1868961-1868797 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 18, 9

Conread position: 19-190
Cow position: chr14:12244552-12244378 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 17

Conread position: 19-190
Cow position: chr14:27609005-27609178 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 96, 41

Conread position: 20-154
Cow position: chr14:42513590-42513457 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 27

Conread position: 20-167
Cow position: chr14:25889922-25890078 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 20-178
Cow position: chr14:22988863-22989028 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 20-180
Cow position: chr14:4877399-4877232 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 20-184
Cow position: chr14:8786710-8786547 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 84

Conread position: 20-186
Cow position: chr14:49487790-49487963 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 68

Conread position: 22-170
Cow position: chr14:14710398-14710250 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 120, 16

Conread position: 22-191
Cow position: chr14:9019870-9020034 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 77

Conread position: 23-191
Cow position: chr14:49807005-49807175 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 23-208
Cow position: chr14:33328791-33328983 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 43, 181

Conread position: 24-184
Cow position: chr14:10721870-10721706 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 79, 106

Conread position: 24-186
Cow position: chr14:44084644-44084487 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 26-170
Cow position: chr14:42917750-42917895 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 79

Conread position: 26-190
Cow position: chr14:21535470-21535299 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 26-190
Cow position: chr14:33247583-33247422 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 161, 15

Conread position: 30-184
Cow position: chr14:8101634-8101793 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 31-170
Cow position: chr14:19355131-19355273 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 31-190
Cow position: chr14:25912493-25912658 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 32-144
Cow position: chr14:27733448-27733567 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 32-178
Cow position: chr14:445136-445281 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 37

Conread position: 32-180
Cow position: chr14:24387291-24387437 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 71, 32

Conread position: 32-186
Cow position: chr14:46114299-46114151 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 32-190
Cow position: chr14:12954535-12954378 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 155, 83

Conread position: 32-190
Cow position: chr14:16352198-16352355 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 154, 81

Conread position: 32-190
Cow position: chr14:41253139-41252984 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 119, 68

Conread position: 32-194
Cow position: chr14:8707396-8707562 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 33-163
Cow position: chr14:37422932-37422803 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 33-186
Cow position: chr14:14622327-14622174 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 36-170
Cow position: chr14:11643402-11643263 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 36-180
Cow position: chr14:4481518-4481667 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 36-180
Cow position: chr14:20466779-20466933 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 36-186
Cow position: chr14:10858284-10858435 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 68, 90

Conread position: 36-186
Cow position: chr14:23078948-23078790 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 37-182
Cow position: chr14:49563928-49563782 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 66

Conread position: 38-186
Cow position: chr14:40806752-40806609 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 38-189
Cow position: chr14:18112745-18112588 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 38-190
Cow position: chr14:18309454-18309300 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 81, 0

Conread position: 38-190
Cow position: chr14:19349694-19349843 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 144, 66

Conread position: 38-196
Cow position: chr14:5630014-5630175 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 40-163
Cow position: chr14:606802-606682 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 40-190
Cow position: chr14:35381437-35381597 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 120

Conread position: 41-189
Cow position: chr14:24991346-24991490 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 43-180
Cow position: chr14:7959649-7959783 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 133, 70

Conread position: 47-186
Cow position: chr14:25381295-25381432 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 48-191
Cow position: chr14:37901856-37902001 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 127

Show alignments to all cow chromosomes.