Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-180
Cow position: chr16:45193576-45193762 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 101, 23

Conread position: 7-164
Cow position: chr16:51216818-51216983 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 33

Conread position: 7-186
Cow position: chr16:14754102-14754282 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 5

Conread position: 7-186
Cow position: chr16:18572828-18573013 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 33

Conread position: 7-190
Cow position: chr16:18429814-18429623 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 17

Conread position: 9-191
Cow position: chr16:9079552-9079374 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 34

Conread position: 11-186
Cow position: chr16:29096142-29095962 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 12-179
Cow position: chr16:23880986-23881163 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 155

Conread position: 12-180
Cow position: chr16:8738290-8738112 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 12-180
Cow position: chr16:11660244-11660414 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 107

Conread position: 12-190
Cow position: chr16:30646729-30646548 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 91, 16

Conread position: 12-214
Cow position: chr16:7136121-7136334 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 6

Conread position: 13-177
Cow position: chr16:52834682-52834838 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 13-190
Cow position: chr16:820475-820286 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 14-164
Cow position: chr16:19756557-19756714 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 14-169
Cow position: chr16:10650470-10650616 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 105, 12

Conread position: 14-186
Cow position: chr16:26069962-26069791 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 76

Conread position: 14-190
Cow position: chr16:18206177-18205995 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 15-191
Cow position: chr16:10148486-10148317 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 167, 28

Conread position: 16-190
Cow position: chr16:23472960-23472785 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 90, 27

Conread position: 18-162
Cow position: chr16:4062570-4062716 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 18-180
Cow position: chr16:11584193-11584358 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 18

Conread position: 18-180
Cow position: chr16:47852380-47852546 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 18-186
Cow position: chr16:9596586-9596411 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 18-189
Cow position: chr16:22984965-22984791 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 85, 18

Conread position: 18-191
Cow position: chr16:6344241-6344405 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 18-197
Cow position: chr16:17746249-17746066 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 82, 18

Conread position: 18-208
Cow position: chr16:7665859-7665658 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 182

Conread position: 19-166
Cow position: chr16:16697432-16697588 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 103, 21

Conread position: 19-189
Cow position: chr16:33290602-33290422 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 84, 26

Conread position: 19-214
Cow position: chr16:40514277-40514471 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 96, 83

Conread position: 20-170
Cow position: chr16:4911237-4911389 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 20

Conread position: 20-186
Cow position: chr16:41530094-41530259 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 99, 12

Conread position: 20-201
Cow position: chr16:56232027-56231852 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 162, 83

Conread position: 24-190
Cow position: chr16:42078637-42078811 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 26-190
Cow position: chr16:52274925-52275093 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 27-189
Cow position: chr16:44138283-44138455 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 19

Conread position: 27-190
Cow position: chr16:25839819-25839656 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 73

Conread position: 27-191
Cow position: chr16:19670150-19670318 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 28-163
Cow position: chr16:46823527-46823662 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 73, 87

Conread position: 28-186
Cow position: chr16:48385210-48385362 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-189
Cow position: chr16:9836573-9836737 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 28-189
Cow position: chr16:39848796-39848957 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 59

Conread position: 28-211
Cow position: chr16:40333127-40333309 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 76

Conread position: 30-186
Cow position: chr16:50931329-50931484 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 121, 6

Conread position: 30-208
Cow position: chr16:46552998-46552811 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 17

Conread position: 31-186
Cow position: chr16:11083200-11083039 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 132

Conread position: 31-190
Cow position: chr16:9513496-9513330 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 31-191
Cow position: chr16:54225313-54225484 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 32-149
Cow position: chr16:50933691-50933809 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 37

Conread position: 32-186
Cow position: chr16:8025666-8025814 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 32-186
Cow position: chr16:8322793-8322941 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 32-186
Cow position: chr16:38355229-38355388 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 32-190
Cow position: chr16:11653333-11653174 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 153, 0

Conread position: 32-190
Cow position: chr16:14242571-14242405 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 150

Conread position: 32-190
Cow position: chr16:23681564-23681399 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 32-190
Cow position: chr16:29655517-29655361 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 155, 81

Conread position: 32-190
Cow position: chr16:42432914-42433075 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 32-208
Cow position: chr16:4102639-4102812 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 155, 81

Conread position: 32-208
Cow position: chr16:39165436-39165256 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 33-183
Cow position: chr16:17283644-17283491 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 33-186
Cow position: chr16:50569462-50569304 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 33-190
Cow position: chr16:11359349-11359187 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 33-190
Cow position: chr16:22773176-22773015 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 36-180
Cow position: chr16:12324653-12324502 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 36-186
Cow position: chr16:51697274-51697126 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 68

Conread position: 36-189
Cow position: chr16:16178224-16178069 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 103

Conread position: 36-190
Cow position: chr16:30211648-30211490 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 0

Conread position: 36-191
Cow position: chr16:22808375-22808523 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 150, 71

Conread position: 36-214
Cow position: chr16:33705001-33704818 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 66, 170

Conread position: 38-149
Cow position: chr16:17285060-17284944 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 38-172
Cow position: chr16:11765058-11765197 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 38-190
Cow position: chr16:51143996-51143835 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 38-191
Cow position: chr16:44688202-44688356 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 71

Conread position: 38-196
Cow position: chr16:17474953-17474795 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 78, 63

Conread position: 38-201
Cow position: chr16:56580103-56579934 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 75, 7

Conread position: 39-186
Cow position: chr16:49860429-49860278 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 62, 7

Conread position: 39-214
Cow position: chr16:48095573-48095754 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 41-180
Cow position: chr16:32893813-32893675 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 43-183
Cow position: chr16:51043838-51043696 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 65, 48

Conread position: 43-191
Cow position: chr16:11957386-11957543 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 44-208
Cow position: chr16:27723402-27723243 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 59

Conread position: 48-186
Cow position: chr16:47774136-47774001 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 48-190
Cow position: chr16:3467031-3466893 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 137, 39

Conread position: 48-214
Cow position: chr16:17736415-17736249 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 132, 55

Conread position: 49-184
Cow position: chr16:14226592-14226727 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 51-180
Cow position: chr16:16571084-16570959 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 54-190
Cow position: chr16:13252138-13252274 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 58

Conread position: 54-190
Cow position: chr16:42241942-42242081 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 110

Show alignments to all cow chromosomes.