Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 3-180
Cow position: chr17:40412850-40412670 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 13

Conread position: 5-178
Cow position: chr17:33154887-33155066 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 7-180
Cow position: chr17:25612354-25612177 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 24

Conread position: 7-189
Cow position: chr17:32349331-32349145 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 7-190
Cow position: chr17:11985618-11985802 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 77

Conread position: 8-173
Cow position: chr17:12946093-12946258 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 7

Conread position: 8-180
Cow position: chr17:25126609-25126437 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 94, 28

Conread position: 8-213
Cow position: chr17:35457549-35457762 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 130

Conread position: 11-186
Cow position: chr17:7554002-7554183 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 20

Conread position: 11-189
Cow position: chr17:34835860-34836030 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 21, 62

Conread position: 12-170
Cow position: chr17:13243792-13243953 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 28

Conread position: 12-189
Cow position: chr17:33933485-33933667 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 12-190
Cow position: chr17:7143121-7142937 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 14-170
Cow position: chr17:18673777-18673943 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 32

Conread position: 14-180
Cow position: chr17:243379-243219 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 14-186
Cow position: chr17:36864884-36864711 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 11

Conread position: 15-186
Cow position: chr17:6761592-6761767 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 122

Conread position: 16-170
Cow position: chr17:1469625-1469472 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 11

Conread position: 16-180
Cow position: chr17:33793410-33793250 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 6, 21

Conread position: 16-186
Cow position: chr17:20929503-20929322 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 10

Conread position: 16-191
Cow position: chr17:10769270-10769436 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 166, 86

Conread position: 16-211
Cow position: chr17:27795917-27795710 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 143

Conread position: 17-186
Cow position: chr17:27429814-27429646 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 72

Conread position: 18-180
Cow position: chr17:6787198-6787023 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 131

Conread position: 18-180
Cow position: chr17:27606772-27606604 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 50

Conread position: 18-190
Cow position: chr17:25875653-25875471 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 18-190
Cow position: chr17:26225282-26225103 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 85, 8

Conread position: 19-186
Cow position: chr17:20234453-20234292 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 51

Conread position: 19-190
Cow position: chr17:21039812-21039633 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 20-186
Cow position: chr17:3387972-3387798 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 11

Conread position: 20-186
Cow position: chr17:20848778-20848603 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 82, 12

Conread position: 20-186
Cow position: chr17:30108686-30108520 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 22

Conread position: 20-190
Cow position: chr17:3364844-3364667 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 21

Conread position: 20-190
Cow position: chr17:18708362-18708535 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 20-201
Cow position: chr17:21718742-21718932 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 8

Conread position: 21-170
Cow position: chr17:20157862-20157704 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 21-185
Cow position: chr17:29355988-29356158 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 21-190
Cow position: chr17:28468380-28468199 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 23-157
Cow position: chr17:2034750-2034622 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 24-172
Cow position: chr17:15103489-15103645 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 41

Conread position: 24-191
Cow position: chr17:12091580-12091746 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 6, 81

Conread position: 26-180
Cow position: chr17:12325520-12325678 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 27-186
Cow position: chr17:9824913-9824750 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 80, 9

Conread position: 27-189
Cow position: chr17:28536975-28536816 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 74

Conread position: 28-160
Cow position: chr17:23257469-23257596 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 28-183
Cow position: chr17:7865071-7864908 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 17

Conread position: 28-190
Cow position: chr17:10825723-10825556 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 52

Conread position: 28-190
Cow position: chr17:33275512-33275674 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 154, 82

Conread position: 29-152
Cow position: chr17:23358359-23358236 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 82

Conread position: 29-186
Cow position: chr17:24883324-24883490 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 30-191
Cow position: chr17:9932066-9932225 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 152, 86

Conread position: 31-147
Cow position: chr17:25632348-25632462 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 31-160
Cow position: chr17:22781351-22781479 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 31-190
Cow position: chr17:24987446-24987282 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 71, 142

Conread position: 31-190
Cow position: chr17:33653449-33653614 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 128, 0

Conread position: 31-191
Cow position: chr17:25585418-25585256 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 32-153
Cow position: chr17:17794349-17794229 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 32-180
Cow position: chr17:7711680-7711524 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 32-182
Cow position: chr17:17822331-17822175 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 114

Conread position: 32-183
Cow position: chr17:21677919-21678074 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 32-186
Cow position: chr17:8809265-8809423 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 85, 148

Conread position: 32-190
Cow position: chr17:3354112-3353959 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 72

Conread position: 32-190
Cow position: chr17:40312942-40312782 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 140

Conread position: 32-214
Cow position: chr17:22051346-22051539 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 33-215
Cow position: chr17:9056457-9056645 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 177

Conread position: 35-180
Cow position: chr17:42675800-42675940 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 36-169
Cow position: chr17:1025595-1025727 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 64

Conread position: 36-169
Cow position: chr17:13922721-13922588 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 126

Conread position: 36-170
Cow position: chr17:24612884-24612747 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 36-186
Cow position: chr17:9260372-9260531 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 36-186
Cow position: chr17:32978698-32978852 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 36-189
Cow position: chr17:12019320-12019471 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 146, 78

Conread position: 36-190
Cow position: chr17:6423993-6423840 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 77

Conread position: 36-191
Cow position: chr17:29292151-29292305 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 150, 131

Conread position: 36-208
Cow position: chr17:25473042-25473221 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 172

Conread position: 38-160
Cow position: chr17:13478367-13478489 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 38-177
Cow position: chr17:21312620-21312756 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 38-180
Cow position: chr17:11912268-11912416 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 38-189
Cow position: chr17:10414730-10414576 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 38-190
Cow position: chr17:18775953-18776111 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 78, 8

Conread position: 38-190
Cow position: chr17:24111366-24111526 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 38-196
Cow position: chr17:20110551-20110386 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 72

Conread position: 40-186
Cow position: chr17:1562556-1562706 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 41-170
Cow position: chr17:6317873-6318005 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 46-190
Cow position: chr17:12536245-12536389 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 136, 67

Conread position: 48-186
Cow position: chr17:35311746-35311611 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 31

Conread position: 48-186
Cow position: chr17:38736658-38736519 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 48-190
Cow position: chr17:11148314-11148175 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 137, 52

Conread position: 49-208
Cow position: chr17:24862681-24862515 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.