Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-144
Cow position: chr18:55280828-55280969 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 11

Conread position: 1-214
Cow position: chr18:2146390-2146602 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 42

Conread position: 2-180
Cow position: chr18:30786927-30786754 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 2-186
Cow position: chr18:4485795-4485606 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 27

Conread position: 4-190
Cow position: chr18:10977017-10977209 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 61

Conread position: 6-180
Cow position: chr18:23630420-23630594 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-186
Cow position: chr18:6075216-6075388 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 20

Conread position: 9-169
Cow position: chr18:12059183-12059021 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 97, 6

Conread position: 9-214
Cow position: chr18:9010897-9010685 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 19

Conread position: 12-186
Cow position: chr18:4264207-4264390 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 12-189
Cow position: chr18:49017669-49017498 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 19

Conread position: 12-190
Cow position: chr18:39860587-39860769 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 17, 165

Conread position: 12-190
Cow position: chr18:52251665-52251855 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 13-165
Cow position: chr18:11867524-11867368 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 18

Conread position: 13-213
Cow position: chr18:45897916-45897710 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 125

Conread position: 14-190
Cow position: chr18:10322983-10322808 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 173, 99

Conread position: 15-177
Cow position: chr18:2793793-2793955 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 87, 13

Conread position: 16-180
Cow position: chr18:45558330-45558161 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 18-180
Cow position: chr18:4851300-4851470 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 51

Conread position: 18-180
Cow position: chr18:14586298-14586457 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 18

Conread position: 18-180
Cow position: chr18:48713723-48713564 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 18-186
Cow position: chr18:24946263-24946094 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 134

Conread position: 18-186
Cow position: chr18:31672338-31672505 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 83, 13

Conread position: 18-186
Cow position: chr18:36098539-36098373 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 18-190
Cow position: chr18:18844195-18844019 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 18-191
Cow position: chr18:20641319-20641495 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 22

Conread position: 18-191
Cow position: chr18:50632262-50632441 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 113

Conread position: 18-208
Cow position: chr18:51405734-51405923 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 10

Conread position: 19-170
Cow position: chr18:42967286-42967135 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 47

Conread position: 19-180
Cow position: chr18:19831757-19831595 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 19-180
Cow position: chr18:24719490-24719326 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 31, 17

Conread position: 19-190
Cow position: chr18:15613684-15613858 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 84, 12

Conread position: 19-190
Cow position: chr18:51643188-51643363 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 84, 26

Conread position: 20-162
Cow position: chr18:22180601-22180746 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 96, 20

Conread position: 20-179
Cow position: chr18:1571060-1571223 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 11

Conread position: 20-180
Cow position: chr18:43796777-43796942 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 20-186
Cow position: chr18:247516-247688 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 97, 0

Conread position: 20-214
Cow position: chr18:25598053-25598255 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 12

Conread position: 21-159
Cow position: chr18:641134-641279 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 120

Conread position: 21-170
Cow position: chr18:28189555-28189698 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 21-190
Cow position: chr18:19849592-19849755 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 166, 19

Conread position: 23-190
Cow position: chr18:18918784-18918956 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 144

Conread position: 24-190
Cow position: chr18:56181281-56181453 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 135

Conread position: 25-190
Cow position: chr18:9846242-9846408 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 15, 92

Conread position: 26-157
Cow position: chr18:26647733-26647595 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 10

Conread position: 26-184
Cow position: chr18:3860013-3859856 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 124, 0

Conread position: 27-214
Cow position: chr18:50004532-50004725 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 167

Conread position: 28-170
Cow position: chr18:22789918-22790065 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 12

Conread position: 28-195
Cow position: chr18:47458867-47459036 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 29-186
Cow position: chr18:47125238-47125393 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 13, 75

Conread position: 30-191
Cow position: chr18:36264610-36264771 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 157, 44

Conread position: 31-190
Cow position: chr18:8170921-8171083 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 32-156
Cow position: chr18:17925875-17925754 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 65

Conread position: 32-170
Cow position: chr18:47868765-47868628 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 71, 89

Conread position: 32-180
Cow position: chr18:34444568-34444723 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 32-186
Cow position: chr18:36500912-36501071 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 32-190
Cow position: chr18:30341013-30341182 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 32-190
Cow position: chr18:46048923-46048754 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 32-191
Cow position: chr18:19809514-19809681 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 32-208
Cow position: chr18:9974161-9974343 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 105

Conread position: 32-214
Cow position: chr18:38937989-38937798 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 33-179
Cow position: chr18:47693221-47693080 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 33-180
Cow position: chr18:38985859-38985712 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-191
Cow position: chr18:29474906-29474745 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 64, 128

Conread position: 33-213
Cow position: chr18:5072249-5072432 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 34-190
Cow position: chr18:5647975-5647815 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 80, 0

Conread position: 35-186
Cow position: chr18:3066502-3066351 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 86

Conread position: 36-170
Cow position: chr18:15809646-15809780 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 36-172
Cow position: chr18:10117901-10117761 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 36-180
Cow position: chr18:9596342-9596196 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 36-180
Cow position: chr18:41702999-41702847 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 36-186
Cow position: chr18:21050924-21051076 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 36-186
Cow position: chr18:44262788-44262637 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 36-190
Cow position: chr18:5632430-5632270 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 36-190
Cow position: chr18:9818928-9818770 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 36-190
Cow position: chr18:42427781-42427622 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 49

Conread position: 36-190
Cow position: chr18:44205929-44206082 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 33

Conread position: 36-190
Cow position: chr18:50359490-50359334 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 79, 0

Conread position: 38-170
Cow position: chr18:16417334-16417472 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 115

Conread position: 38-179
Cow position: chr18:10757894-10758041 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 38-180
Cow position: chr18:30586073-30586212 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 38-180
Cow position: chr18:33159106-33158955 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 38-186
Cow position: chr18:43014707-43014860 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 38-190
Cow position: chr18:51192585-51192738 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 26

Conread position: 39-189
Cow position: chr18:21143806-21143959 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 41-189
Cow position: chr18:5766569-5766413 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 43-214
Cow position: chr18:28322811-28322634 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 87

Conread position: 48-184
Cow position: chr18:35414072-35414204 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 49-190
Cow position: chr18:47565967-47565827 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 79, 20

Conread position: 54-182
Cow position: chr18:49655828-49655697 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 95

Show alignments to all cow chromosomes.