Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 4-180
Cow position: chr19:22871035-22871220 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 4-196
Cow position: chr19:40450219-40450037 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 5-186
Cow position: chr19:21176526-21176712 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 20, 38

Conread position: 10-186
Cow position: chr19:268559-268383 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 14

Conread position: 11-190
Cow position: chr19:23378891-23378700 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 12-190
Cow position: chr19:14581567-14581387 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 93, 12

Conread position: 13-138
Cow position: chr19:39802105-39801980 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 13

Conread position: 13-179
Cow position: chr19:15853136-15852963 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 13-191
Cow position: chr19:5185046-5185232 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 14-170
Cow position: chr19:31319367-31319206 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 141

Conread position: 14-180
Cow position: chr19:23784214-23784384 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 14-190
Cow position: chr19:15091934-15092112 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 60

Conread position: 14-212
Cow position: chr19:39576366-39576566 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 101, 18

Conread position: 16-180
Cow position: chr19:2577765-2577594 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 10

Conread position: 18-180
Cow position: chr19:41024427-41024259 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 18-184
Cow position: chr19:36245304-36245463 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 87

Conread position: 18-186
Cow position: chr19:16659383-16659541 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 18-186
Cow position: chr19:52356456-52356281 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 98, 22

Conread position: 18-189
Cow position: chr19:10970903-10971071 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 148, 85

Conread position: 18-189
Cow position: chr19:15244268-15244103 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 85

Conread position: 18-210
Cow position: chr19:46822914-46822713 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 137

Conread position: 18-227
Cow position: chr19:13267000-13267212 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 19-157
Cow position: chr19:49959075-49958928 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 19-208
Cow position: chr19:30471153-30471349 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 0

Conread position: 20-180
Cow position: chr19:8185408-8185238 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 20-180
Cow position: chr19:37560005-37560162 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 20-180
Cow position: chr19:43413982-43413818 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 20-184
Cow position: chr19:3217206-3217046 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 33

Conread position: 20-186
Cow position: chr19:11816522-11816694 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 78, 20

Conread position: 20-214
Cow position: chr19:23756548-23756743 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 83

Conread position: 21-190
Cow position: chr19:38732338-38732163 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 95, 15

Conread position: 22-180
Cow position: chr19:4586345-4586512 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 22-180
Cow position: chr19:49290256-49290422 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 26-149
Cow position: chr19:11376224-11376344 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 26-178
Cow position: chr19:37109411-37109566 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 38

Conread position: 26-186
Cow position: chr19:41850050-41850205 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 12

Conread position: 26-192
Cow position: chr19:56063246-56063407 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 161, 5

Conread position: 26-208
Cow position: chr19:35321941-35322130 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 5

Conread position: 26-210
Cow position: chr19:28037721-28037899 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 27-180
Cow position: chr19:34420604-34420444 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 76, 9

Conread position: 27-190
Cow position: chr19:12264154-12263988 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 28-186
Cow position: chr19:10172524-10172366 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 8

Conread position: 28-190
Cow position: chr19:1978369-1978205 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 81, 10

Conread position: 28-190
Cow position: chr19:2137634-2137801 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 18

Conread position: 28-190
Cow position: chr19:3811827-3811995 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 31-195
Cow position: chr19:6417800-6417628 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 31-214
Cow position: chr19:37067325-37067139 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 32-160
Cow position: chr19:24220315-24220452 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 32-170
Cow position: chr19:31268803-31268667 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 83, 8

Conread position: 32-170
Cow position: chr19:31269025-31268889 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 83, 8

Conread position: 32-180
Cow position: chr19:37466870-37467026 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 32-187
Cow position: chr19:6855108-6854946 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 32-189
Cow position: chr19:24933340-24933498 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 105

Conread position: 32-190
Cow position: chr19:6532065-6531911 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 110, 71

Conread position: 32-190
Cow position: chr19:11194573-11194738 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 32-190
Cow position: chr19:23304298-23304466 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 32-190
Cow position: chr19:29958497-29958654 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 130, 71

Conread position: 32-190
Cow position: chr19:34166559-34166391 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 43

Conread position: 32-191
Cow position: chr19:42695180-42695019 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 113

Conread position: 32-191
Cow position: chr19:46713815-46713660 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 155, 71

Conread position: 32-196
Cow position: chr19:12601993-12601823 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 32-214
Cow position: chr19:49221431-49221622 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 36-190
Cow position: chr19:12943807-12943657 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 146, 63

Conread position: 36-190
Cow position: chr19:28137334-28137178 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 36-197
Cow position: chr19:32938046-32937879 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 38-182
Cow position: chr19:35380355-35380494 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 38-183
Cow position: chr19:35540468-35540331 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 38-186
Cow position: chr19:12202464-12202612 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 15

Conread position: 38-190
Cow position: chr19:7637050-7637211 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 38-190
Cow position: chr19:20694048-20693894 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 78, 126

Conread position: 38-201
Cow position: chr19:41645535-41645375 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 62

Conread position: 39-194
Cow position: chr19:22836112-22836267 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 75, 121

Conread position: 40-190
Cow position: chr19:5521975-5522131 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 101

Conread position: 40-190
Cow position: chr19:39612988-39613141 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 116

Conread position: 40-216
Cow position: chr19:13121103-13121287 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 63, 111

Conread position: 41-208
Cow position: chr19:26975889-26976060 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 75, 164

Conread position: 41-211
Cow position: chr19:9572987-9573157 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 148

Conread position: 43-186
Cow position: chr19:7031945-7032088 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 128

Conread position: 43-208
Cow position: chr19:6854106-6854274 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 26

Conread position: 44-186
Cow position: chr19:25526458-25526313 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 48-166
Cow position: chr19:7594981-7595103 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 48-179
Cow position: chr19:13488331-13488464 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 48-186
Cow position: chr19:20935928-20935783 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 48-186
Cow position: chr19:25410679-25410818 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 48-190
Cow position: chr19:24224509-24224363 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 48-191
Cow position: chr19:14563541-14563394 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.