Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 1-186
Cow position: chr21:6851459-6851276 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 102, 9

Conread position: 1-186
Cow position: chr21:15543939-15544125 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 71

Conread position: 6-190
Cow position: chr21:28244755-28244569 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 18

Conread position: 6-207
Cow position: chr21:24757225-24757024 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 106, 25

Conread position: 10-165
Cow position: chr21:33244597-33244746 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 21

Conread position: 13-190
Cow position: chr21:30222625-30222444 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 90, 23

Conread position: 14-161
Cow position: chr21:1296009-1295858 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 14-186
Cow position: chr21:12298872-12298698 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 15-131
Cow position: chr21:40432747-40432626 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 15-186
Cow position: chr21:8523912-8523745 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 11

Conread position: 15-186
Cow position: chr21:18495496-18495325 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 99, 24

Conread position: 15-190
Cow position: chr21:40589197-40589383 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 16-170
Cow position: chr21:18497716-18497874 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 16-170
Cow position: chr21:29011691-29011852 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 135

Conread position: 16-215
Cow position: chr21:34654353-34654146 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 18-182
Cow position: chr21:34581429-34581583 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 18-186
Cow position: chr21:27521060-27521235 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 38

Conread position: 18-187
Cow position: chr21:8207036-8206875 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 18-190
Cow position: chr21:11678042-11678213 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 164, 85

Conread position: 18-191
Cow position: chr21:30145354-30145530 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 82, 10

Conread position: 18-197
Cow position: chr21:27863238-27863418 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 119

Conread position: 19-190
Cow position: chr21:38901042-38900873 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 168, 84

Conread position: 20-154
Cow position: chr21:908170-908307 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 21-160
Cow position: chr21:23348323-23348460 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 21-179
Cow position: chr21:6713248-6713412 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 15

Conread position: 21-196
Cow position: chr21:9905586-9905760 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 15

Conread position: 23-149
Cow position: chr21:5489025-5488890 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 27-186
Cow position: chr21:10673381-10673225 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 100, 86

Conread position: 28-172
Cow position: chr21:30976997-30977145 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 123

Conread position: 28-177
Cow position: chr21:15012702-15012552 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 37

Conread position: 28-180
Cow position: chr21:742545-742387 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 28-186
Cow position: chr21:46848862-46849024 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 7, 0

Conread position: 28-190
Cow position: chr21:641854-641686 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 30-190
Cow position: chr21:26735664-26735504 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 89, 10

Conread position: 31-186
Cow position: chr21:43655969-43655806 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 118

Conread position: 32-169
Cow position: chr21:13395847-13395719 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 32-169
Cow position: chr21:40571205-40571345 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 71, 122

Conread position: 32-189
Cow position: chr21:38449186-38449348 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 32-190
Cow position: chr21:5427193-5427040 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 32-190
Cow position: chr21:5898143-5898303 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 78, 21

Conread position: 32-190
Cow position: chr21:6051771-6051602 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 32-190
Cow position: chr21:6998207-6998046 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 32-190
Cow position: chr21:25014774-25014931 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 83, 117

Conread position: 32-190
Cow position: chr21:32339478-32339641 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 32-213
Cow position: chr21:438822-438640 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 82, 167

Conread position: 33-214
Cow position: chr21:22851180-22850995 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 36-180
Cow position: chr21:8358967-8359115 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 27

Conread position: 36-180
Cow position: chr21:20174574-20174428 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 36-180
Cow position: chr21:30658123-30657980 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 36-186
Cow position: chr21:31279515-31279360 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 36-190
Cow position: chr21:48482268-48482431 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 36-191
Cow position: chr21:33413835-33413990 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 34, 79

Conread position: 36-208
Cow position: chr21:23587134-23586962 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 79, 64

Conread position: 36-215
Cow position: chr21:8426705-8426519 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 95

Conread position: 38-160
Cow position: chr21:3236763-3236640 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 38-170
Cow position: chr21:37495684-37495824 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 38-186
Cow position: chr21:20160938-20160780 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 30

Conread position: 38-186
Cow position: chr21:32536651-32536500 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 38-191
Cow position: chr21:30848688-30848843 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 78, 0

Conread position: 38-191
Cow position: chr21:49353884-49353734 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 150, 65

Conread position: 39-180
Cow position: chr21:24797914-24797764 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 39-186
Cow position: chr21:2785242-2785389 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 39-188
Cow position: chr21:30592055-30592208 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 39-196
Cow position: chr21:23673004-23672838 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 41

Conread position: 40-178
Cow position: chr21:21159061-21158923 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 40-190
Cow position: chr21:1511544-1511388 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 40-190
Cow position: chr21:21907183-21907335 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 43-186
Cow position: chr21:2294267-2294127 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 30

Conread position: 48-180
Cow position: chr21:14760807-14760675 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 34

Conread position: 48-211
Cow position: chr21:8351044-8351217 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 52-180
Cow position: chr21:7424767-7424904 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.