Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C040097.5 |
| Conread position: | 2-186 |
| Cow position: | chr22:28672367-28672182 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 2-190 |
| Cow position: | chr22:36539427-36539620 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-181 |
| Cow position: | chr22:11221403-11221227 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 6-146 |
| Cow position: | chr22:14142897-14143044 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 6-201 |
| Cow position: | chr22:17652658-17652456 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-180 |
| Cow position: | chr22:18838472-18838299 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 7-195 |
| Cow position: | chr22:1320711-1320521 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 8-186 |
| Cow position: | chr22:15490875-15490691 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 20 |
| Conread position: | 8-214 |
| Cow position: | chr22:7913676-7913474 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 9-190 |
| Cow position: | chr22:1552120-1551933 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 10-197 |
| Cow position: | chr22:43730504-43730310 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 11-180 |
| Cow position: | chr22:45012541-45012714 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 12-178 |
| Cow position: | chr22:43398218-43398047 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 12-182 |
| Cow position: | chr22:45019429-45019605 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 14-186 |
| Cow position: | chr22:8733131-8733300 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 14-187 |
| Cow position: | chr22:15695520-15695689 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 14-190 |
| Cow position: | chr22:19376889-19376702 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 15-170 |
| Cow position: | chr22:11202068-11201917 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 15-180 |
| Cow position: | chr22:42685098-42684935 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 16-180 |
| Cow position: | chr22:39696513-39696347 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 16-186 |
| Cow position: | chr22:11790198-11790020 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 16-190 |
| Cow position: | chr22:14006391-14006209 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 17-180 |
| Cow position: | chr22:17852426-17852593 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 18-164 |
| Cow position: | chr22:23249522-23249668 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 20, 87 |
| Conread position: | 18-180 |
| Cow position: | chr22:14641645-14641814 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 18-181 |
| Cow position: | chr22:38115396-38115232 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 144, 93 |
| Conread position: | 18-190 |
| Cow position: | chr22:12777172-12777345 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 19-170 |
| Cow position: | chr22:15567810-15567963 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 19-186 |
| Cow position: | chr22:8287391-8287220 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 19-190 |
| Cow position: | chr22:30687231-30687058 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 19-190 |
| Cow position: | chr22:37202059-37201881 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 19-190 |
| Cow position: | chr22:40864698-40864534 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 163, 83 |
| Conread position: | 20-186 |
| Cow position: | chr22:530368-530541 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 20-186 |
| Cow position: | chr22:12749704-12749864 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 20-186 |
| Cow position: | chr22:25809070-25809239 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 20-207 |
| Cow position: | chr22:22613312-22613122 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 20-214 |
| Cow position: | chr22:5616505-5616309 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 22-185 |
| Cow position: | chr22:30471488-30471642 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 22-190 |
| Cow position: | chr22:1830253-1830080 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 23-186 |
| Cow position: | chr22:44410925-44410758 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-209 |
| Cow position: | chr22:33948772-33948958 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 144 |
| Conread position: | 26-221 |
| Cow position: | chr22:10763983-10763783 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 27-170 |
| Cow position: | chr22:30269604-30269461 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 27-190 |
| Cow position: | chr22:45771820-45771992 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 27-214 |
| Cow position: | chr22:4060745-4060940 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 28-169 |
| Cow position: | chr22:27171065-27171207 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 28-186 |
| Cow position: | chr22:2876595-2876761 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 28-190 |
| Cow position: | chr22:8090331-8090500 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 28-227 |
| Cow position: | chr22:3945557-3945362 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 23 |
| Conread position: | 29-149 |
| Cow position: | chr22:7528614-7528496 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 30-214 |
| Cow position: | chr22:15668282-15668471 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 31-155 |
| Cow position: | chr22:13849067-13849187 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-166 |
| Cow position: | chr22:12997638-12997779 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 31-186 |
| Cow position: | chr22:8157668-8157820 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 31-189 |
| Cow position: | chr22:33399290-33399455 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 31-191 |
| Cow position: | chr22:27508841-27508689 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 157, 78 |
| Conread position: | 32-170 |
| Cow position: | chr22:12678222-12678369 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 32-179 |
| Cow position: | chr22:4054403-4054548 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 32-180 |
| Cow position: | chr22:12316006-12315854 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 32-181 |
| Cow position: | chr22:44717919-44717763 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 32-190 |
| Cow position: | chr22:1304356-1304521 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 32-190 |
| Cow position: | chr22:12573404-12573236 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 32-191 |
| Cow position: | chr22:5384833-5384686 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 32-195 |
| Cow position: | chr22:534688-534526 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 32-201 |
| Cow position: | chr22:35029458-35029290 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 155, 81 |
| Conread position: | 32-212 |
| Cow position: | chr22:11613625-11613433 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 32-214 |
| Cow position: | chr22:14372366-14372176 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 33-186 |
| Cow position: | chr22:38815004-38815162 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 33-189 |
| Cow position: | chr22:29954816-29954972 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 33-190 |
| Cow position: | chr22:9735466-9735301 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 36-169 |
| Cow position: | chr22:10295223-10295089 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 36-180 |
| Cow position: | chr22:4563551-4563406 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 36-190 |
| Cow position: | chr22:2201929-2201772 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 36-214 |
| Cow position: | chr22:16813990-16813805 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 132 |
| Conread position: | 38-186 |
| Cow position: | chr22:23675780-23675931 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 38-190 |
| Cow position: | chr22:14644026-14643868 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 38-190 |
| Cow position: | chr22:20627026-20626869 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 39-190 |
| Cow position: | chr22:6360001-6360152 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 39-190 |
| Cow position: | chr22:14178640-14178795 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 40-179 |
| Cow position: | chr22:8447098-8446958 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 40-195 |
| Cow position: | chr22:2524141-2523989 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 144, 63 |
| Conread position: | 43-190 |
| Cow position: | chr22:18145723-18145568 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 48-186 |
| Cow position: | chr22:9597402-9597543 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 50-185 |
| Cow position: | chr22:6793699-6793836 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.