Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C040097.5 |
| Conread position: | 2-190 |
| Cow position: | chr24:32890841-32891033 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 10-190 |
| Cow position: | chr24:28722080-28721899 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 13-170 |
| Cow position: | chr24:6488402-6488240 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 13-186 |
| Cow position: | chr24:39523253-39523433 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-212 |
| Cow position: | chr24:36554505-36554706 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 14-186 |
| Cow position: | chr24:43349451-43349623 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-190 |
| Cow position: | chr24:230472-230294 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 18-169 |
| Cow position: | chr24:30483753-30483908 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 18-173 |
| Cow position: | chr24:25970895-25971047 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 18-180 |
| Cow position: | chr24:13353215-13353061 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-180 |
| Cow position: | chr24:36286761-36286591 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-207 |
| Cow position: | chr24:26588415-26588214 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 18-214 |
| Cow position: | chr24:37823715-37823513 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 19-169 |
| Cow position: | chr24:28303170-28303322 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 19-179 |
| Cow position: | chr24:24136218-24136380 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 19-190 |
| Cow position: | chr24:18405087-18405270 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 20-180 |
| Cow position: | chr24:27810339-27810179 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 20-180 |
| Cow position: | chr24:42688031-42687867 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 20-190 |
| Cow position: | chr24:27844344-27844517 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 24-190 |
| Cow position: | chr24:31383295-31383127 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 24-196 |
| Cow position: | chr24:27206048-27206214 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 26-190 |
| Cow position: | chr24:29539744-29539918 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 26-200 |
| Cow position: | chr24:43832707-43832529 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-180 |
| Cow position: | chr24:21834778-21834937 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 28-180 |
| Cow position: | chr24:5360893-5360738 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 28-190 |
| Cow position: | chr24:13114922-13114767 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 29-186 |
| Cow position: | chr24:7777453-7777613 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 31-172 |
| Cow position: | chr24:41925995-41925852 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 31-190 |
| Cow position: | chr24:16510150-16509988 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 32-143 |
| Cow position: | chr24:21895439-21895330 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 32-157 |
| Cow position: | chr24:31160864-31160993 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 32-185 |
| Cow position: | chr24:34396012-34396162 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 32-186 |
| Cow position: | chr24:3494059-3493900 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 32-190 |
| Cow position: | chr24:1269955-1269794 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 32-190 |
| Cow position: | chr24:6677813-6677657 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 33-190 |
| Cow position: | chr24:19187109-19186948 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 33-192 |
| Cow position: | chr24:27719353-27719517 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 36-180 |
| Cow position: | chr24:16995052-16994903 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 36-190 |
| Cow position: | chr24:24490852-24491006 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 38-186 |
| Cow position: | chr24:23000173-23000029 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 38-190 |
| Cow position: | chr24:37945474-37945618 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 65 |
| Conread position: | 38-214 |
| Cow position: | chr24:28553400-28553578 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 39-171 |
| Cow position: | chr24:2223050-2223181 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 40-191 |
| Cow position: | chr24:30945421-30945573 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 43-189 |
| Cow position: | chr24:25122504-25122353 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 46-166 |
| Cow position: | chr24:25231160-25231282 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 48-186 |
| Cow position: | chr24:41423758-41423619 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 48-190 |
| Cow position: | chr24:38841271-38841411 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 55 |
Show alignments to all cow chromosomes.