Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C040097.5 |
| Conread position: | 2-214 |
| Cow position: | chr6:27219439-27219219 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 194 |
| Conread position: | 5-177 |
| Cow position: | chr6:56850281-56850108 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 5-188 |
| Cow position: | chr6:31564083-31564260 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 5-190 |
| Cow position: | chr6:32866955-32867143 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 7-187 |
| Cow position: | chr6:19293063-19292880 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 7-190 |
| Cow position: | chr6:13367548-13367360 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 10-180 |
| Cow position: | chr6:9008356-9008526 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 10-186 |
| Cow position: | chr6:15300576-15300753 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 93, 111 |
| Conread position: | 11-186 |
| Cow position: | chr6:53711667-53711482 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 12-190 |
| Cow position: | chr6:55417272-55417453 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 12-208 |
| Cow position: | chr6:32122157-32121965 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 90 |
| Conread position: | 13-137 |
| Cow position: | chr6:23173311-23173180 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 13-170 |
| Cow position: | chr6:10613093-10612937 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 13-181 |
| Cow position: | chr6:46558315-46558142 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-190 |
| Cow position: | chr6:37463265-37463097 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 174, 18 |
| Conread position: | 13-190 |
| Cow position: | chr6:64432195-64432013 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 13-196 |
| Cow position: | chr6:41655793-41655973 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 14-186 |
| Cow position: | chr6:15172813-15172648 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 14-210 |
| Cow position: | chr6:4756062-4755870 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 131, 17 |
| Conread position: | 15-191 |
| Cow position: | chr6:54203814-54203983 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 16-187 |
| Cow position: | chr6:44543891-44544070 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 16-190 |
| Cow position: | chr6:23401738-23401917 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 16-190 |
| Cow position: | chr6:59602957-59603133 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 16-191 |
| Cow position: | chr6:1475595-1475419 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 71, 89 |
| Conread position: | 16-208 |
| Cow position: | chr6:34076420-34076219 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 24 |
| Conread position: | 17-180 |
| Cow position: | chr6:38771530-38771366 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 101 |
| Conread position: | 17-190 |
| Cow position: | chr6:58725624-58725445 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 18-180 |
| Cow position: | chr6:16091151-16090989 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 18-186 |
| Cow position: | chr6:21061635-21061806 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 19-181 |
| Cow position: | chr6:53546283-53546120 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 21-190 |
| Cow position: | chr6:43540009-43540175 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 21-191 |
| Cow position: | chr6:35436240-35436068 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 25-190 |
| Cow position: | chr6:54127573-54127738 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 26-170 |
| Cow position: | chr6:58370995-58370846 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 26-186 |
| Cow position: | chr6:6060326-6060492 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 26-190 |
| Cow position: | chr6:143130-143300 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 27-186 |
| Cow position: | chr6:47173790-47173948 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 87, 98 |
| Conread position: | 28-186 |
| Cow position: | chr6:66058002-66057850 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 28-190 |
| Cow position: | chr6:26450547-26450387 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 28-190 |
| Cow position: | chr6:37994451-37994283 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-191 |
| Cow position: | chr6:7189884-7190045 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 28-195 |
| Cow position: | chr6:61576051-61575890 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 29-190 |
| Cow position: | chr6:37149427-37149264 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 31-166 |
| Cow position: | chr6:15243082-15242936 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 31-180 |
| Cow position: | chr6:48278652-48278803 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 31-190 |
| Cow position: | chr6:18117806-18117975 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-190 |
| Cow position: | chr6:44194312-44194474 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 31-193 |
| Cow position: | chr6:23532888-23532728 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 32-166 |
| Cow position: | chr6:47884803-47884930 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 32-186 |
| Cow position: | chr6:34463348-34463508 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 32-186 |
| Cow position: | chr6:35989996-35990154 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 32-186 |
| Cow position: | chr6:59297288-59297132 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 32-190 |
| Cow position: | chr6:8966330-8966172 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 32-190 |
| Cow position: | chr6:54490504-54490658 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 32-191 |
| Cow position: | chr6:53024569-53024730 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 95 |
| Conread position: | 32-195 |
| Cow position: | chr6:7291553-7291384 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 36-167 |
| Cow position: | chr6:11262979-11262845 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 36-170 |
| Cow position: | chr6:611781-611645 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 95 |
| Conread position: | 36-186 |
| Cow position: | chr6:30024115-30023965 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 36-191 |
| Cow position: | chr6:33206967-33206810 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 99 |
| Conread position: | 38-186 |
| Cow position: | chr6:19446489-19446329 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 38-191 |
| Cow position: | chr6:60118378-60118224 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 38-208 |
| Cow position: | chr6:36470342-36470504 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 39 |
| Conread position: | 39-190 |
| Cow position: | chr6:32268652-32268813 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 39-190 |
| Cow position: | chr6:59265478-59265626 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 148, 64 |
| Conread position: | 40-170 |
| Cow position: | chr6:34195928-34196054 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 63 |
| Conread position: | 40-186 |
| Cow position: | chr6:1429868-1429720 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 40-186 |
| Cow position: | chr6:30825543-30825689 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 45-190 |
| Cow position: | chr6:23942445-23942585 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 55 |
| Conread position: | 48-190 |
| Cow position: | chr6:10189988-10189846 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 51-190 |
| Cow position: | chr6:15058598-15058451 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 52-190 |
| Cow position: | chr6:60740232-60740089 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 57-166 |
| Cow position: | chr6:21736685-21736792 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.