Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 4-169
Cow position: chr8:20291510-20291351 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 101

Conread position: 4-210
Cow position: chr8:6271585-6271379 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 6

Conread position: 7-166
Cow position: chr8:9646773-9646614 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 94

Conread position: 7-190
Cow position: chr8:56249993-56249808 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 113, 17

Conread position: 8-233
Cow position: chr8:20327613-20327849 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 162

Conread position: 9-179
Cow position: chr8:55089621-55089791 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 55

Conread position: 10-184
Cow position: chr8:56823688-56823860 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 166, 103

Conread position: 10-190
Cow position: chr8:38993968-38993779 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 162

Conread position: 11-208
Cow position: chr8:46082396-46082198 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 20

Conread position: 12-175
Cow position: chr8:32243827-32243658 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 24

Conread position: 13-144
Cow position: chr8:30428716-30428847 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 24

Conread position: 13-180
Cow position: chr8:16053921-16053750 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 13

Conread position: 13-186
Cow position: chr8:8323636-8323819 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 23

Conread position: 13-186
Cow position: chr8:11216628-11216804 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 23

Conread position: 13-186
Cow position: chr8:55348555-55348385 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 55

Conread position: 13-190
Cow position: chr8:48512795-48512967 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 27

Conread position: 13-191
Cow position: chr8:10801659-10801835 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 173, 100

Conread position: 14-180
Cow position: chr8:13922869-13922695 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 14

Conread position: 15-190
Cow position: chr8:45149574-45149746 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 172, 25

Conread position: 15-190
Cow position: chr8:55502809-55502631 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 46

Conread position: 15-191
Cow position: chr8:5476292-5476463 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 104, 16

Conread position: 15-191
Cow position: chr8:43112620-43112801 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 16-180
Cow position: chr8:36034735-36034911 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 16-186
Cow position: chr8:54306581-54306405 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 26

Conread position: 16-191
Cow position: chr8:39896463-39896292 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 21

Conread position: 17-186
Cow position: chr8:39556359-39556180 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 132

Conread position: 18-115
Cow position: chr8:53642168-53642263 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 18-164
Cow position: chr8:46684650-46684503 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 24

Conread position: 18-186
Cow position: chr8:57219020-57218852 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 96

Conread position: 18-190
Cow position: chr8:53964240-53964411 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 42

Conread position: 19-170
Cow position: chr8:20975702-20975553 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 19-170
Cow position: chr8:38996882-38996722 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 19-190
Cow position: chr8:12778674-12778847 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 12

Conread position: 19-191
Cow position: chr8:39968054-39968237 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 19-213
Cow position: chr8:57389020-57388820 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 16

Conread position: 20-190
Cow position: chr8:8715012-8714840 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 16

Conread position: 20-190
Cow position: chr8:33807502-33807671 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 94

Conread position: 20-214
Cow position: chr8:11594246-11594058 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 84

Conread position: 21-180
Cow position: chr8:37559345-37559189 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 7

Conread position: 21-188
Cow position: chr8:31767813-31767986 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 24-170
Cow position: chr8:26315285-26315426 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 24-186
Cow position: chr8:38137627-38137474 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 26-190
Cow position: chr8:31265691-31265864 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 26-221
Cow position: chr8:21776130-21775935 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 161, 38

Conread position: 27-190
Cow position: chr8:24419068-24419231 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 161, 83

Conread position: 27-190
Cow position: chr8:25649474-25649635 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 160, 13

Conread position: 28-178
Cow position: chr8:55885189-55885032 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 28-180
Cow position: chr8:33664114-33663960 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 17

Conread position: 28-186
Cow position: chr8:32192895-32192741 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 76

Conread position: 28-186
Cow position: chr8:58636948-58636793 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 82, 121

Conread position: 28-190
Cow position: chr8:5477637-5477805 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 75, 113

Conread position: 28-190
Cow position: chr8:60339711-60339873 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 92, 75

Conread position: 28-191
Cow position: chr8:60455394-60455231 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 159, 85

Conread position: 30-190
Cow position: chr8:572947-573109 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 88

Conread position: 30-191
Cow position: chr8:61443004-61443170 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 31-160
Cow position: chr8:5516042-5515907 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 31-186
Cow position: chr8:31902475-31902635 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 31-189
Cow position: chr8:23370106-23370263 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 152, 72

Conread position: 31-191
Cow position: chr8:29004059-29004215 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 156, 82

Conread position: 31-215
Cow position: chr8:49305534-49305730 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 32-171
Cow position: chr8:61277952-61278096 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 8

Conread position: 32-180
Cow position: chr8:32133477-32133326 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 32-186
Cow position: chr8:48524755-48524907 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 32-189
Cow position: chr8:10435078-10434928 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 32-189
Cow position: chr8:60668307-60668463 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 85, 71

Conread position: 32-190
Cow position: chr8:53552882-53552721 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 16

Conread position: 32-209
Cow position: chr8:4525289-4525107 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 68, 59

Conread position: 33-180
Cow position: chr8:32854623-32854766 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 33-180
Cow position: chr8:45879239-45879091 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 31

Conread position: 33-180
Cow position: chr8:45925821-45925673 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 31

Conread position: 33-186
Cow position: chr8:53360038-53360188 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 33-208
Cow position: chr8:35497474-35497653 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 75, 165

Conread position: 36-170
Cow position: chr8:23596561-23596696 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 36-180
Cow position: chr8:4557708-4557850 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 83, 51

Conread position: 36-186
Cow position: chr8:28210195-28210033 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 36-186
Cow position: chr8:38711796-38711644 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 0

Conread position: 36-189
Cow position: chr8:19785067-19784906 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 36-190
Cow position: chr8:4500697-4500538 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 36-190
Cow position: chr8:39898895-39898743 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 32

Conread position: 36-190
Cow position: chr8:58393767-58393608 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 36

Conread position: 36-209
Cow position: chr8:37635787-37635968 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 37-179
Cow position: chr8:10336835-10336980 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 38-166
Cow position: chr8:54052504-54052379 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 38-170
Cow position: chr8:39845812-39845681 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 38-175
Cow position: chr8:23585754-23585898 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 38-186
Cow position: chr8:25639898-25640050 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 132

Conread position: 38-190
Cow position: chr8:37709341-37709196 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 149, 26

Conread position: 38-191
Cow position: chr8:36375315-36375471 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 38-195
Cow position: chr8:37443730-37443571 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 132

Conread position: 39-190
Cow position: chr8:61128495-61128651 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 40-191
Cow position: chr8:44568996-44568846 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 100, 63

Conread position: 40-191
Cow position: chr8:54211055-54210914 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 125, 63

Conread position: 40-214
Cow position: chr8:19860470-19860649 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 78

Conread position: 40-218
Cow position: chr8:36860671-36860490 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 103

Conread position: 43-184
Cow position: chr8:29463281-29463425 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 26

Conread position: 50-180
Cow position: chr8:18081723-18081590 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.