Cow genome map

Conread name: Ss1.1-LyN1-MLN01C040097.5

Conread position: 2-189
Cow position: chrX:13924121-13923928 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 13, 35

Conread position: 4-186
Cow position: chrX:4559991-4559800 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 99, 14

Conread position: 4-186
Cow position: chrX:25441300-25441477 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 108, 28

Conread position: 7-180
Cow position: chrX:29601572-29601755 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 9-115
Cow position: chrX:25282759-25282866 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 12-179
Cow position: chrX:45429782-45429948 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 107, 19

Conread position: 12-180
Cow position: chrX:41215573-41215395 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 91, 28

Conread position: 12-186
Cow position: chrX:17525625-17525800 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 53

Conread position: 12-190
Cow position: chrX:27145848-27145666 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 20

Conread position: 12-213
Cow position: chrX:23136980-23136780 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 19

Conread position: 13-189
Cow position: chrX:11633932-11633745 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 11

Conread position: 13-214
Cow position: chrX:27431674-27431881 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 46

Conread position: 14-186
Cow position: chrX:46910055-46909882 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 88, 17

Conread position: 15-178
Cow position: chrX:1571347-1571514 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 15-190
Cow position: chrX:32747969-32747794 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 34

Conread position: 15-190
Cow position: chrX:33001145-33000967 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 88, 21

Conread position: 15-208
Cow position: chrX:32910343-32910147 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 15

Conread position: 16-180
Cow position: chrX:31744767-31744931 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 81

Conread position: 16-180
Cow position: chrX:42331520-42331357 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 98, 48

Conread position: 16-190
Cow position: chrX:26881831-26882018 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 16-190
Cow position: chrX:35885487-35885665 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 87, 22

Conread position: 18-170
Cow position: chrX:43028473-43028315 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 99, 12

Conread position: 18-186
Cow position: chrX:6544491-6544321 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 18-189
Cow position: chrX:16836049-16836226 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 18-190
Cow position: chrX:34836825-34837002 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 50

Conread position: 18-190
Cow position: chrX:39353017-39352848 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 95, 0

Conread position: 18-191
Cow position: chrX:42449770-42449953 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 85, 10

Conread position: 19-146
Cow position: chrX:11454418-11454288 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 19-186
Cow position: chrX:42875453-42875279 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 84, 0

Conread position: 19-186
Cow position: chrX:42894165-42893993 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 11

Conread position: 19-190
Cow position: chrX:4289676-4289506 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 163, 12

Conread position: 19-190
Cow position: chrX:17956933-17956753 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 168

Conread position: 19-208
Cow position: chrX:9650780-9650981 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 21-190
Cow position: chrX:19394797-19394615 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 21-210
Cow position: chrX:40556221-40556417 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 20, 5

Conread position: 23-169
Cow position: chrX:14900272-14900418 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 13

Conread position: 25-180
Cow position: chrX:34314260-34314097 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 25-190
Cow position: chrX:908180-908008 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 89

Conread position: 26-186
Cow position: chrX:24054896-24054744 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 10

Conread position: 26-196
Cow position: chrX:38094290-38094464 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 14

Conread position: 27-190
Cow position: chrX:46072595-46072755 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 160, 9

Conread position: 27-210
Cow position: chrX:21986064-21986250 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 28-186
Cow position: chrX:14135909-14135745 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 12

Conread position: 28-190
Cow position: chrX:1499889-1499727 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 75

Conread position: 28-190
Cow position: chrX:11589133-11589305 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 8

Conread position: 28-190
Cow position: chrX:11656313-11656143 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 0

Conread position: 28-190
Cow position: chrX:42246945-42247120 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 28-208
Cow position: chrX:12980-12794 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 137

Conread position: 28-208
Cow position: chrX:15006922-15007106 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 89

Conread position: 28-208
Cow position: chrX:41238127-41238311 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 28-239
Cow position: chrX:41858649-41858872 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 30-212
Cow position: chrX:23471636-23471827 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 31-208
Cow position: chrX:38218945-38218757 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 86, 0

Conread position: 32-160
Cow position: chrX:13893037-13892910 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 32-179
Cow position: chrX:1087917-1088069 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 32-179
Cow position: chrX:2551308-2551166 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 32-180
Cow position: chrX:41166598-41166752 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 32-186
Cow position: chrX:14973525-14973679 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 84

Conread position: 32-186
Cow position: chrX:40567837-40567688 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 72

Conread position: 32-189
Cow position: chrX:16323784-16323954 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 32-190
Cow position: chrX:3806909-3806744 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 32-190
Cow position: chrX:12437052-12437208 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 32-190
Cow position: chrX:23108258-23108103 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 155, 73

Conread position: 32-190
Cow position: chrX:23497466-23497629 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 98

Conread position: 32-190
Cow position: chrX:27415357-27415518 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 50

Conread position: 32-190
Cow position: chrX:40116699-40116544 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 32-216
Cow position: chrX:1503538-1503364 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 155, 70

Conread position: 33-170
Cow position: chrX:20710388-20710255 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 33-170
Cow position: chrX:41123275-41123142 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 33-180
Cow position: chrX:3494820-3494972 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 139

Conread position: 33-186
Cow position: chrX:25925426-25925575 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 33-208
Cow position: chrX:46068533-46068716 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 21

Conread position: 33-214
Cow position: chrX:32867100-32866912 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 33-215
Cow position: chrX:27668732-27668922 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 49

Conread position: 36-160
Cow position: chrX:22284910-22284783 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 36-170
Cow position: chrX:35029709-35029843 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 79, 13

Conread position: 36-190
Cow position: chrX:11762784-11762939 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 151, 0

Conread position: 36-190
Cow position: chrX:20584539-20584390 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 146, 67

Conread position: 36-190
Cow position: chrX:38964324-38964170 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 64

Conread position: 38-157
Cow position: chrX:26956336-26956456 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 38-189
Cow position: chrX:30420742-30420888 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 38-190
Cow position: chrX:35382817-35382974 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 141

Conread position: 38-218
Cow position: chrX:11653992-11653803 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 39-194
Cow position: chrX:27202793-27202628 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 40-190
Cow position: chrX:31442616-31442767 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 147, 0

Conread position: 41-180
Cow position: chrX:25420546-25420404 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 42-214
Cow position: chrX:31436690-31436511 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 44-180
Cow position: chrX:20152067-20151929 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 76, 60

Conread position: 49-191
Cow position: chrX:37119789-37119654 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 136, 54

Conread position: 50-190
Cow position: chrX:1615845-1615981 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 60, 45

Conread position: 51-191
Cow position: chrX:126968-126828 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 136, 64

Show alignments to all cow chromosomes.