Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 441-881 |
| Cow position: | chr1:1064866-1064406 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 334 |
| Conread position: | 442-702 |
| Cow position: | chr1:31518784-31519057 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 118, 61 |
| Conread position: | 473-682 |
| Cow position: | chr1:81152168-81152391 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 473-716 |
| Cow position: | chr1:40204343-40204089 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 475-705 |
| Cow position: | chr1:6482207-6482448 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 475-706 |
| Cow position: | chr1:79170827-79171064 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 476-725 |
| Cow position: | chr1:73085616-73085883 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 482-826 |
| Cow position: | chr1:16390062-16389720 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 484-689 |
| Cow position: | chr1:57533684-57533477 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 486-672 |
| Cow position: | chr1:82406030-82405832 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 486-689 |
| Cow position: | chr1:102650044-102649834 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 486-716 |
| Cow position: | chr1:60502804-60503037 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 488-716 |
| Cow position: | chr1:27972962-27972721 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 489-716 |
| Cow position: | chr1:84314054-84314291 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 493-676 |
| Cow position: | chr1:1115779-1115971 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 493-705 |
| Cow position: | chr1:93736804-93736585 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 494-716 |
| Cow position: | chr1:84793261-84793497 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 500-716 |
| Cow position: | chr1:28783444-28783657 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 80, 5 |
| Conread position: | 505-826 |
| Cow position: | chr1:43223391-43223706 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 514-826 |
| Cow position: | chr1:51822287-51822603 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 523-825 |
| Cow position: | chr1:578664-578979 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 154 |
| Conread position: | 524-826 |
| Cow position: | chr1:3266349-3266058 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 524-826 |
| Cow position: | chr1:43584413-43584099 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 526-826 |
| Cow position: | chr1:27876053-27875746 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 533-826 |
| Cow position: | chr1:92045677-92045375 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 542-838 |
| Cow position: | chr1:17133975-17133677 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 550-767 |
| Cow position: | chr1:45879789-45880005 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 558-830 |
| Cow position: | chr1:91972427-91972695 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 567-826 |
| Cow position: | chr1:19554950-19555210 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 629-826 |
| Cow position: | chr1:89096541-89096739 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 631-814 |
| Cow position: | chr1:14305259-14305084 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 631-828 |
| Cow position: | chr1:71964824-71965019 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 633-825 |
| Cow position: | chr1:91777945-91777749 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 637-824 |
| Cow position: | chr1:44097425-44097239 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 658-786 |
| Cow position: | chr1:98880011-98880139 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-869 |
| Cow position: | chr1:84245737-84245950 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 659-906 |
| Cow position: | chr1:76596070-76595826 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 172, 27 |
| Conread position: | 659-911 |
| Cow position: | chr1:81112644-81112901 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 185, 56 |
| Conread position: | 659-912 |
| Cow position: | chr1:35434507-35434242 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 659-912 |
| Cow position: | chr1:47365254-47364996 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 215 |
| Conread position: | 659-912 |
| Cow position: | chr1:57084165-57084417 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 185, 61 |
| Conread position: | 659-912 |
| Cow position: | chr1:95062970-95062715 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 171, 145 |
| Conread position: | 660-860 |
| Cow position: | chr1:88767865-88767653 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 660-906 |
| Cow position: | chr1:21993164-21992924 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 177, 37 |
| Conread position: | 660-912 |
| Cow position: | chr1:81528609-81528362 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 202, 49 |
| Conread position: | 660-912 |
| Cow position: | chr1:91026045-91025809 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 231, 72 |
| Conread position: | 664-860 |
| Cow position: | chr1:87757573-87757781 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 664-867 |
| Cow position: | chr1:30086412-30086609 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 664-906 |
| Cow position: | chr1:32496204-32495958 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 147, 140 |
| Conread position: | 682-826 |
| Cow position: | chr1:10195166-10195309 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 685-846 |
| Cow position: | chr1:43588762-43588923 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 709-912 |
| Cow position: | chr1:79839814-79840022 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 722-911 |
| Cow position: | chr1:85664419-85664607 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 724-831 |
| Cow position: | chr1:4233105-4232998 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 771-866 |
| Cow position: | chr1:49548835-49548931 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.