Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 442-825 |
| Cow position: | chr11:37032521-37032125 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 442-911 |
| Cow position: | chr11:42472117-42471631 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 461-672 |
| Cow position: | chr11:1926224-1926429 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 471-705 |
| Cow position: | chr11:60204323-60204543 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 474-705 |
| Cow position: | chr11:5616061-5615817 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 481-705 |
| Cow position: | chr11:4593315-4593096 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 484-703 |
| Cow position: | chr11:38643229-38643462 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 484-705 |
| Cow position: | chr11:37008637-37008407 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 485-705 |
| Cow position: | chr11:5161618-5161855 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 486-700 |
| Cow position: | chr11:44148968-44149194 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-704 |
| Cow position: | chr11:71988767-71988987 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 486-704 |
| Cow position: | chr11:74535001-74535219 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 486-705 |
| Cow position: | chr11:36239498-36239275 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 78, 21 |
| Conread position: | 486-716 |
| Cow position: | chr11:35428794-35428549 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 486-828 |
| Cow position: | chr11:48662940-48662601 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 489-716 |
| Cow position: | chr11:68982151-68981910 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 493-831 |
| Cow position: | chr11:37915731-37916066 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 85 |
| Conread position: | 494-703 |
| Cow position: | chr11:70795045-70794821 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 494-711 |
| Cow position: | chr11:28242827-28243056 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 494-846 |
| Cow position: | chr11:2421156-2421504 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 512-723 |
| Cow position: | chr11:61518917-61518708 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 515-833 |
| Cow position: | chr11:32777300-32776975 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 43 |
| Conread position: | 523-825 |
| Cow position: | chr11:16197853-16197553 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 523-826 |
| Cow position: | chr11:75259907-75260222 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 524-825 |
| Cow position: | chr11:73450592-73450281 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 524-826 |
| Cow position: | chr11:40620549-40620857 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 525-824 |
| Cow position: | chr11:82103140-82102834 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 525-828 |
| Cow position: | chr11:55011032-55010714 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 526-728 |
| Cow position: | chr11:51329454-51329669 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 551-826 |
| Cow position: | chr11:64888004-64888276 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 578-723 |
| Cow position: | chr11:8476909-8476764 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-845 |
| Cow position: | chr11:64841494-64841747 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 260, 129 |
| Conread position: | 579-702 |
| Cow position: | chr11:85710636-85710513 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 631-811 |
| Cow position: | chr11:32600849-32601028 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 631-825 |
| Cow position: | chr11:85728102-85727900 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 637-867 |
| Cow position: | chr11:5188329-5188558 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 199, 6 |
| Conread position: | 639-912 |
| Cow position: | chr11:4176619-4176913 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 642-912 |
| Cow position: | chr11:18480777-18480512 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 195, 22 |
| Conread position: | 652-891 |
| Cow position: | chr11:5144375-5144135 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 656-864 |
| Cow position: | chr11:17706632-17706838 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 658-906 |
| Cow position: | chr11:36901339-36901088 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 178, 158 |
| Conread position: | 658-912 |
| Cow position: | chr11:5251927-5251672 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 65 |
| Conread position: | 658-912 |
| Cow position: | chr11:6604937-6605194 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 158 |
| Conread position: | 659-792 |
| Cow position: | chr11:61286902-61286769 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-906 |
| Cow position: | chr11:11682901-11683141 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 223, 38 |
| Conread position: | 659-906 |
| Cow position: | chr11:33918059-33918311 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 663-831 |
| Cow position: | chr11:75202031-75202193 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 675-831 |
| Cow position: | chr11:34413925-34413770 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 695-867 |
| Cow position: | chr11:70012703-70012529 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 707-911 |
| Cow position: | chr11:67774793-67774991 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 174, 20 |
| Conread position: | 715-912 |
| Cow position: | chr11:7548928-7548732 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 721-912 |
| Cow position: | chr11:33280059-33280252 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 723-912 |
| Cow position: | chr11:19703749-19703949 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 724-906 |
| Cow position: | chr11:59372623-59372434 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
Show alignments to all cow chromosomes.