Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 442-716 |
| Cow position: | chr13:20704453-20704726 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 442-723 |
| Cow position: | chr13:17169956-17170249 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 445-705 |
| Cow position: | chr13:17882335-17882067 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 447-641 |
| Cow position: | chr13:43361063-43360861 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 447-906 |
| Cow position: | chr13:53161768-53161321 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 475-689 |
| Cow position: | chr13:52218251-52218042 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 475-700 |
| Cow position: | chr13:822958-822720 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 476-700 |
| Cow position: | chr13:13760657-13760417 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 481-716 |
| Cow position: | chr13:10798460-10798704 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 484-667 |
| Cow position: | chr13:43189984-43189803 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 484-705 |
| Cow position: | chr13:12766187-12765957 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 486-705 |
| Cow position: | chr13:2336138-2335912 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-705 |
| Cow position: | chr13:15702878-15702648 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 493-704 |
| Cow position: | chr13:1234626-1234401 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 493-723 |
| Cow position: | chr13:1421761-1421528 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 493-737 |
| Cow position: | chr13:43703153-43703393 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 493-823 |
| Cow position: | chr13:41842999-41843330 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 493-826 |
| Cow position: | chr13:61031218-61030873 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 494-705 |
| Cow position: | chr13:6309043-6309259 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 494-705 |
| Cow position: | chr13:49537100-49536879 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 494-716 |
| Cow position: | chr13:25812710-25812927 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 510-822 |
| Cow position: | chr13:52282486-52282188 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 513-793 |
| Cow position: | chr13:31494649-31494929 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 518-704 |
| Cow position: | chr13:18318009-18318192 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 524-791 |
| Cow position: | chr13:19534312-19534591 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 524-826 |
| Cow position: | chr13:16570720-16571029 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 151 |
| Conread position: | 524-826 |
| Cow position: | chr13:19546603-19546289 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 533-826 |
| Cow position: | chr13:16045984-16045689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 558-764 |
| Cow position: | chr13:5274085-5274294 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 578-823 |
| Cow position: | chr13:8617022-8617278 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 191, 86 |
| Conread position: | 629-826 |
| Cow position: | chr13:61894908-61895106 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 103 |
| Conread position: | 636-819 |
| Cow position: | chr13:43360583-43360403 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 67 |
| Conread position: | 657-860 |
| Cow position: | chr13:33321806-33321608 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 159, 7 |
| Conread position: | 659-783 |
| Cow position: | chr13:19282139-19282015 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-866 |
| Cow position: | chr13:30329914-30330112 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 659-906 |
| Cow position: | chr13:22946607-22946367 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 185, 48 |
| Conread position: | 659-906 |
| Cow position: | chr13:52288644-52288414 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 232, 110 |
| Conread position: | 659-912 |
| Cow position: | chr13:45305024-45304776 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 232, 50 |
| Conread position: | 690-899 |
| Cow position: | chr13:390120-389909 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 147, 180 |
| Conread position: | 714-831 |
| Cow position: | chr13:47664308-47664425 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 723-866 |
| Cow position: | chr13:51924785-51924640 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
Show alignments to all cow chromosomes.