Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 447-632 |
| Cow position: | chr17:17448807-17449004 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 457-825 |
| Cow position: | chr17:12739617-12739994 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 473-689 |
| Cow position: | chr17:7329316-7329522 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 474-672 |
| Cow position: | chr17:28083731-28083938 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 474-756 |
| Cow position: | chr17:6841146-6841435 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 474-822 |
| Cow position: | chr17:22043384-22043032 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 475-702 |
| Cow position: | chr17:25190359-25190597 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 481-693 |
| Cow position: | chr17:6880877-6881102 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 482-669 |
| Cow position: | chr17:41691043-41690861 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 486-826 |
| Cow position: | chr17:38874701-38875040 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 486-912 |
| Cow position: | chr17:25556795-25557204 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 487-826 |
| Cow position: | chr17:21613859-21613533 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 148, 18 |
| Conread position: | 489-705 |
| Cow position: | chr17:21479836-21480067 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 493-728 |
| Cow position: | chr17:26222291-26222541 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 494-689 |
| Cow position: | chr17:36145925-36145727 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 495-902 |
| Cow position: | chr17:23565171-23564753 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 524-763 |
| Cow position: | chr17:22511710-22511464 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 568-780 |
| Cow position: | chr17:13381985-13381774 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 176, 10 |
| Conread position: | 626-812 |
| Cow position: | chr17:33548192-33548008 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 67 |
| Conread position: | 628-911 |
| Cow position: | chr17:17641851-17642147 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 629-912 |
| Cow position: | chr17:17449162-17449453 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 631-826 |
| Cow position: | chr17:22581832-22581638 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 658-831 |
| Cow position: | chr17:31562357-31562537 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 658-906 |
| Cow position: | chr17:5348260-5348517 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 100 |
| Conread position: | 659-907 |
| Cow position: | chr17:11051994-11051734 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 659-911 |
| Cow position: | chr17:11124661-11124910 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 177, 21 |
| Conread position: | 659-912 |
| Cow position: | chr17:11244475-11244208 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 659-912 |
| Cow position: | chr17:21460976-21460714 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 178, 101 |
| Conread position: | 659-912 |
| Cow position: | chr17:25546249-25546512 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 659-912 |
| Cow position: | chr17:42337729-42337470 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 73, 204 |
| Conread position: | 663-906 |
| Cow position: | chr17:1491251-1491008 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 174, 44 |
| Conread position: | 663-906 |
| Cow position: | chr17:1730225-1729982 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 168, 141 |
| Conread position: | 663-906 |
| Cow position: | chr17:1756951-1757194 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 173, 95 |
| Conread position: | 663-906 |
| Cow position: | chr17:6763106-6762857 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 663-910 |
| Cow position: | chr17:43730426-43730181 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 172, 48 |
| Conread position: | 673-867 |
| Cow position: | chr17:891943-892142 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 674-912 |
| Cow position: | chr17:29040330-29040087 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 731-912 |
| Cow position: | chr17:43261573-43261757 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
Show alignments to all cow chromosomes.