Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 209-346 |
| Cow position: | chr2:80327264-80327122 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 441-760 |
| Cow position: | chr2:19237328-19236994 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 447-716 |
| Cow position: | chr2:12303204-12302931 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 447-891 |
| Cow position: | chr2:46267549-46267087 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 471-704 |
| Cow position: | chr2:3437092-3436845 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 471-705 |
| Cow position: | chr2:36972471-36972711 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 473-705 |
| Cow position: | chr2:82419483-82419238 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 474-702 |
| Cow position: | chr2:47178071-47178309 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 475-728 |
| Cow position: | chr2:48975133-48975385 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 103, 28 |
| Conread position: | 480-723 |
| Cow position: | chr2:20788842-20788589 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 486-702 |
| Cow position: | chr2:46322367-46322141 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 486-705 |
| Cow position: | chr2:15997147-15996916 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 486-705 |
| Cow position: | chr2:82137112-82137328 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 486-723 |
| Cow position: | chr2:71501485-71501737 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 490-712 |
| Cow position: | chr2:20866126-20865893 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 493-689 |
| Cow position: | chr2:69086161-69085955 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 493-825 |
| Cow position: | chr2:76048446-76048120 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 515-826 |
| Cow position: | chr2:40473725-40474032 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 518-790 |
| Cow position: | chr2:2072738-2073007 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 519-723 |
| Cow position: | chr2:74180123-74180338 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 524-803 |
| Cow position: | chr2:39790616-39790339 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 154 |
| Conread position: | 524-826 |
| Cow position: | chr2:39580009-39580310 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 524-828 |
| Cow position: | chr2:39796375-39796686 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 524-831 |
| Cow position: | chr2:82928984-82928678 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 553-765 |
| Cow position: | chr2:74896972-74897185 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 567-823 |
| Cow position: | chr2:6939091-6938836 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 568-822 |
| Cow position: | chr2:44204004-44204257 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 13 |
| Conread position: | 568-826 |
| Cow position: | chr2:23607718-23607978 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 10 |
| Conread position: | 568-826 |
| Cow position: | chr2:76037528-76037779 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 579-780 |
| Cow position: | chr2:5483738-5483548 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 587-788 |
| Cow position: | chr2:65780471-65780664 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 601-825 |
| Cow position: | chr2:35994831-35995059 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 619-828 |
| Cow position: | chr2:45007632-45007845 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 634-826 |
| Cow position: | chr2:45308898-45308707 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 642-831 |
| Cow position: | chr2:86527949-86527758 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 649-826 |
| Cow position: | chr2:57449173-57449348 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 657-857 |
| Cow position: | chr2:30639590-30639393 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 179, 7 |
| Conread position: | 658-912 |
| Cow position: | chr2:46008597-46008845 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 224, 79 |
| Conread position: | 659-778 |
| Cow position: | chr2:74693109-74693227 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 659-906 |
| Cow position: | chr2:46966711-46966458 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 136 |
| Conread position: | 659-912 |
| Cow position: | chr2:39579018-39578772 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 148, 78 |
| Conread position: | 659-912 |
| Cow position: | chr2:66982050-66981798 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 169, 88 |
| Conread position: | 660-911 |
| Cow position: | chr2:54448610-54448355 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 660-912 |
| Cow position: | chr2:41697446-41697182 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 660-912 |
| Cow position: | chr2:46408850-46409116 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 663-901 |
| Cow position: | chr2:70829692-70829450 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 170, 97 |
| Conread position: | 664-835 |
| Cow position: | chr2:38897285-38897120 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 672-835 |
| Cow position: | chr2:46025399-46025237 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 672-867 |
| Cow position: | chr2:28574192-28573995 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 174, 120 |
| Conread position: | 702-911 |
| Cow position: | chr2:72603808-72604031 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 721-912 |
| Cow position: | chr2:50192223-50192415 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 58 |
Show alignments to all cow chromosomes.