Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 439-828 |
| Cow position: | chr25:40631896-40632275 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 443-906 |
| Cow position: | chr25:11433515-11433997 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 447-632 |
| Cow position: | chr25:22158146-22157968 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 447-912 |
| Cow position: | chr25:7493243-7493710 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 192 |
| Conread position: | 461-872 |
| Cow position: | chr25:12254355-12254780 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 473-716 |
| Cow position: | chr25:14334735-14334489 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 474-711 |
| Cow position: | chr25:7768022-7768257 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 474-798 |
| Cow position: | chr25:7052690-7053027 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 477-712 |
| Cow position: | chr25:9523640-9523884 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 481-689 |
| Cow position: | chr25:20252797-20252588 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 486-676 |
| Cow position: | chr25:20396046-20395852 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 486-704 |
| Cow position: | chr25:9844446-9844224 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 486-711 |
| Cow position: | chr25:7797442-7797207 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 486-716 |
| Cow position: | chr25:5309308-5309550 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 486-716 |
| Cow position: | chr25:16086645-16086871 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 500-684 |
| Cow position: | chr25:6758003-6757816 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 505-826 |
| Cow position: | chr25:36780300-36780001 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 505-828 |
| Cow position: | chr25:12408886-12409208 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 514-840 |
| Cow position: | chr25:12142332-12142655 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 524-826 |
| Cow position: | chr25:16117339-16117021 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 525-876 |
| Cow position: | chr25:36818284-36818639 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 307 |
| Conread position: | 530-822 |
| Cow position: | chr25:31060787-31060487 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 547-826 |
| Cow position: | chr25:10474095-10473819 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 578-716 |
| Cow position: | chr25:6983439-6983577 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 585-912 |
| Cow position: | chr25:6761375-6761061 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 587-823 |
| Cow position: | chr25:9836248-9836013 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 77 |
| Conread position: | 589-846 |
| Cow position: | chr25:24444806-24444551 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 634-911 |
| Cow position: | chr25:22157733-22157459 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 650-867 |
| Cow position: | chr25:11260207-11259991 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 187, 14 |
| Conread position: | 652-906 |
| Cow position: | chr25:15656540-15656285 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 13 |
| Conread position: | 656-875 |
| Cow position: | chr25:14556403-14556183 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 657-867 |
| Cow position: | chr25:6130935-6130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 183, 7 |
| Conread position: | 657-912 |
| Cow position: | chr25:8544001-8543753 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 180, 42 |
| Conread position: | 659-897 |
| Cow position: | chr25:36035199-36034962 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 223, 100 |
| Conread position: | 659-906 |
| Cow position: | chr25:16805813-16806071 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 659-912 |
| Cow position: | chr25:24577130-24577395 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 659-912 |
| Cow position: | chr25:24605288-24605554 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 107 |
| Conread position: | 659-912 |
| Cow position: | chr25:31247037-31247300 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 663-867 |
| Cow position: | chr25:9153-9359 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 664-912 |
| Cow position: | chr25:15456218-15456471 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 670-912 |
| Cow position: | chr25:10292147-10291904 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 693-912 |
| Cow position: | chr25:22585513-22585739 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 721-911 |
| Cow position: | chr25:5794713-5794522 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 59 |
Show alignments to all cow chromosomes.