Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 424-716 |
| Cow position: | chr27:30466917-30467213 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 441-684 |
| Cow position: | chr27:205343-205094 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 442-705 |
| Cow position: | chr27:22334849-22335133 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 442-912 |
| Cow position: | chr27:31211469-31211949 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 443-912 |
| Cow position: | chr27:24715567-24716042 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 178 |
| Conread position: | 447-705 |
| Cow position: | chr27:29836767-29837038 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 34 |
| Conread position: | 447-826 |
| Cow position: | chr27:15408264-15408662 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 196 |
| Conread position: | 448-912 |
| Cow position: | chr27:24722213-24722702 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 449-912 |
| Cow position: | chr27:1791452-1790978 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 461-911 |
| Cow position: | chr27:22442025-22441558 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 477-700 |
| Cow position: | chr27:6343621-6343391 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 484-688 |
| Cow position: | chr27:31551440-31551223 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 485-705 |
| Cow position: | chr27:9519154-9519370 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 485-743 |
| Cow position: | chr27:1644352-1644623 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 486-700 |
| Cow position: | chr27:20832173-20831946 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-705 |
| Cow position: | chr27:6916002-6915770 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 486-711 |
| Cow position: | chr27:18498076-18497837 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 486-723 |
| Cow position: | chr27:28151002-28150751 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 488-684 |
| Cow position: | chr27:25503499-25503293 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 493-704 |
| Cow position: | chr27:5169059-5169284 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 510-906 |
| Cow position: | chr27:11596384-11595987 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 517-895 |
| Cow position: | chr27:13704934-13705306 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 524-824 |
| Cow position: | chr27:22629719-22630033 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 217 |
| Conread position: | 524-825 |
| Cow position: | chr27:15218045-15218358 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 266 |
| Conread position: | 569-826 |
| Cow position: | chr27:22277165-22277421 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 639-831 |
| Cow position: | chr27:26124657-26124466 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 654-912 |
| Cow position: | chr27:24717787-24717531 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 185, 10 |
| Conread position: | 658-867 |
| Cow position: | chr27:11478377-11478167 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 178, 45 |
| Conread position: | 659-867 |
| Cow position: | chr27:29521229-29521020 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 177, 125 |
| Conread position: | 659-906 |
| Cow position: | chr27:15106219-15106470 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 668-910 |
| Cow position: | chr27:2973523-2973770 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 683-912 |
| Cow position: | chr27:29673664-29673893 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 199, 107 |
| Conread position: | 715-912 |
| Cow position: | chr27:20611017-20610820 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 75 |
Show alignments to all cow chromosomes.