Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 442-830 |
| Cow position: | chr29:9409186-9409589 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 447-632 |
| Cow position: | chr29:37987626-37987438 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 447-735 |
| Cow position: | chr29:27020866-27020584 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 473-716 |
| Cow position: | chr29:1954490-1954235 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 474-704 |
| Cow position: | chr29:1762546-1762789 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 475-704 |
| Cow position: | chr29:27114253-27114477 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 484-705 |
| Cow position: | chr29:16945935-16946169 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 492-705 |
| Cow position: | chr29:32201772-32201979 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 493-912 |
| Cow position: | chr29:824581-824159 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 494-684 |
| Cow position: | chr29:20061467-20061271 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 505-866 |
| Cow position: | chr29:41021604-41021969 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 53 |
| Conread position: | 511-716 |
| Cow position: | chr29:37209409-37209628 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 205 |
| Conread position: | 519-705 |
| Cow position: | chr29:34285402-34285599 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 519-824 |
| Cow position: | chr29:41345770-41345470 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 524-766 |
| Cow position: | chr29:42550218-42550466 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 146 |
| Conread position: | 524-777 |
| Cow position: | chr29:14146097-14145835 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 544-702 |
| Cow position: | chr29:25454212-25454053 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 558-826 |
| Cow position: | chr29:4885658-4885392 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 631-828 |
| Cow position: | chr29:10118671-10118474 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 631-846 |
| Cow position: | chr29:37987114-37986892 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 658-910 |
| Cow position: | chr29:37996509-37996246 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 175, 211 |
| Conread position: | 659-831 |
| Cow position: | chr29:36055067-36054886 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 108 |
| Conread position: | 659-867 |
| Cow position: | chr29:29783638-29783429 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 659-906 |
| Cow position: | chr29:1542126-1542375 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 659-906 |
| Cow position: | chr29:3335985-3335734 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 659-912 |
| Cow position: | chr29:4669072-4669341 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 659-912 |
| Cow position: | chr29:13386909-13387174 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 660-863 |
| Cow position: | chr29:1627552-1627348 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 660-905 |
| Cow position: | chr29:11191268-11191509 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 222, 51 |
| Conread position: | 660-911 |
| Cow position: | chr29:26946115-26946368 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 179, 72 |
| Conread position: | 664-867 |
| Cow position: | chr29:24135567-24135355 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 721-911 |
| Cow position: | chr29:33563907-33564094 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 59 |
Show alignments to all cow chromosomes.