Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 470-703 |
| Cow position: | chr3:81576662-81576910 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 471-705 |
| Cow position: | chr3:23035129-23034885 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 471-716 |
| Cow position: | chr3:24156593-24156336 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 473-705 |
| Cow position: | chr3:77692084-77691850 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 473-716 |
| Cow position: | chr3:6950341-6950095 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 475-705 |
| Cow position: | chr3:81368388-81368154 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 475-717 |
| Cow position: | chr3:67824416-67824176 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 476-652 |
| Cow position: | chr3:70485525-70485701 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 486-705 |
| Cow position: | chr3:2119263-2119493 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 486-705 |
| Cow position: | chr3:48337556-48337781 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 486-705 |
| Cow position: | chr3:48565889-48566123 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 486-716 |
| Cow position: | chr3:33158964-33158735 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 486-822 |
| Cow position: | chr3:81991991-81991636 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 493-691 |
| Cow position: | chr3:24503602-24503394 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 493-803 |
| Cow position: | chr3:36747688-36747993 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 493-826 |
| Cow position: | chr3:9187935-9188249 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 54 |
| Conread position: | 496-689 |
| Cow position: | chr3:5640748-5640953 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 506-911 |
| Cow position: | chr3:7146731-7146315 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 524-754 |
| Cow position: | chr3:60535566-60535805 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 524-793 |
| Cow position: | chr3:21278258-21277993 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 524-833 |
| Cow position: | chr3:29842417-29842741 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 290 |
| Conread position: | 525-826 |
| Cow position: | chr3:51414690-51415003 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 525-826 |
| Cow position: | chr3:74406569-74406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 526-776 |
| Cow position: | chr3:28716741-28716980 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 526-828 |
| Cow position: | chr3:54563496-54563811 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 544-826 |
| Cow position: | chr3:62739963-62740241 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 558-755 |
| Cow position: | chr3:28630041-28629846 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 558-831 |
| Cow position: | chr3:59579092-59579361 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 568-906 |
| Cow position: | chr3:63495958-63496304 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 11 |
| Conread position: | 578-705 |
| Cow position: | chr3:44569696-44569823 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 593-790 |
| Cow position: | chr3:81527483-81527288 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 593-826 |
| Cow position: | chr3:60492177-60492410 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-803 |
| Cow position: | chr3:3643452-3643305 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 659-837 |
| Cow position: | chr3:74797250-74797069 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 659-880 |
| Cow position: | chr3:58594688-58594914 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 659-912 |
| Cow position: | chr3:14756484-14756219 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 659-912 |
| Cow position: | chr3:21715057-21714811 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 214, 50 |
| Conread position: | 660-863 |
| Cow position: | chr3:68661894-68661690 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 663-912 |
| Cow position: | chr3:14185487-14185745 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 663-912 |
| Cow position: | chr3:40567006-40566739 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 696-906 |
| Cow position: | chr3:71470732-71470949 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 711-835 |
| Cow position: | chr3:5052835-5052959 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.