Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 441-906 |
| Cow position: | chr4:44847569-44847101 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 448-716 |
| Cow position: | chr4:41853132-41852852 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 448-912 |
| Cow position: | chr4:122053-121573 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 456-911 |
| Cow position: | chr4:53658813-53659277 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 471-716 |
| Cow position: | chr4:16007263-16007018 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 38 |
| Conread position: | 474-689 |
| Cow position: | chr4:25586397-25586619 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 474-689 |
| Cow position: | chr4:64701655-64701429 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 8 |
| Conread position: | 482-705 |
| Cow position: | chr4:63218499-63218272 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 486-669 |
| Cow position: | chr4:65041972-65042159 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 486-705 |
| Cow position: | chr4:46787661-46787880 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 486-716 |
| Cow position: | chr4:13515798-13516041 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 486-851 |
| Cow position: | chr4:32008353-32008727 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 493-699 |
| Cow position: | chr4:37489192-37488986 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 493-705 |
| Cow position: | chr4:66930423-66930201 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 505-826 |
| Cow position: | chr4:21005520-21005847 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 272 |
| Conread position: | 510-824 |
| Cow position: | chr4:68406986-68407294 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 523-826 |
| Cow position: | chr4:43404638-43404324 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 524-685 |
| Cow position: | chr4:11012282-11012114 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 524-756 |
| Cow position: | chr4:62625204-62625435 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 524-818 |
| Cow position: | chr4:42961765-42962063 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 525-804 |
| Cow position: | chr4:10861426-10861145 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 249 |
| Conread position: | 533-826 |
| Cow position: | chr4:23690714-23690424 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 142 |
| Conread position: | 640-912 |
| Cow position: | chr4:11689742-11689472 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 197, 24 |
| Conread position: | 658-898 |
| Cow position: | chr4:40252470-40252235 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 179, 156 |
| Conread position: | 659-906 |
| Cow position: | chr4:45986652-45986401 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 659-912 |
| Cow position: | chr4:61680507-61680252 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 663-874 |
| Cow position: | chr4:63082645-63082422 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 673-911 |
| Cow position: | chr4:60942288-60942537 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 680-826 |
| Cow position: | chr4:11011872-11011730 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 680-906 |
| Cow position: | chr4:20907298-20907070 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 689-869 |
| Cow position: | chr4:2685024-2684847 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 144, 0 |
Show alignments to all cow chromosomes.