Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 415-826 |
| Cow position: | chr5:56624033-56623623 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 442-705 |
| Cow position: | chr5:59786458-59786734 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 57 |
| Conread position: | 447-639 |
| Cow position: | chr5:75541095-75540890 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 447-826 |
| Cow position: | chr5:48478360-48478748 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 474-672 |
| Cow position: | chr5:34469548-34469754 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 474-688 |
| Cow position: | chr5:22185413-22185634 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 474-701 |
| Cow position: | chr5:60916472-60916711 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 474-723 |
| Cow position: | chr5:44490983-44490724 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 476-716 |
| Cow position: | chr5:19683219-19683473 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 476-716 |
| Cow position: | chr5:36405581-36405830 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 481-705 |
| Cow position: | chr5:69121956-69122189 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 486-700 |
| Cow position: | chr5:55295835-55295607 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-702 |
| Cow position: | chr5:46821693-46821478 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 486-705 |
| Cow position: | chr5:15604720-15604478 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 486-716 |
| Cow position: | chr5:32087728-32087505 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 486-817 |
| Cow position: | chr5:14856137-14855798 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 491-704 |
| Cow position: | chr5:8771267-8771039 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 493-672 |
| Cow position: | chr5:14095228-14095043 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 493-705 |
| Cow position: | chr5:47490890-47491106 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 493-723 |
| Cow position: | chr5:10882910-10883148 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 494-672 |
| Cow position: | chr5:48250735-48250547 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 494-831 |
| Cow position: | chr5:69527095-69526757 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 500-704 |
| Cow position: | chr5:47761429-47761637 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 505-833 |
| Cow position: | chr5:20188610-20188934 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 510-790 |
| Cow position: | chr5:36669854-36670126 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 515-716 |
| Cow position: | chr5:43156668-43156469 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 524-823 |
| Cow position: | chr5:42714028-42714328 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 533-748 |
| Cow position: | chr5:66307768-66307980 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 538-826 |
| Cow position: | chr5:64370619-64370920 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 541-828 |
| Cow position: | chr5:44134407-44134695 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 188, 5 |
| Conread position: | 558-826 |
| Cow position: | chr5:64183296-64183559 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 566-716 |
| Cow position: | chr5:50994750-50994901 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 580-912 |
| Cow position: | chr5:7657390-7657710 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 590-830 |
| Cow position: | chr5:72590436-72590658 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 620-826 |
| Cow position: | chr5:43463670-43463464 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-911 |
| Cow position: | chr5:33715686-33715954 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 659-912 |
| Cow position: | chr5:40699307-40699577 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 659-912 |
| Cow position: | chr5:64105678-64105922 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 177, 96 |
| Conread position: | 663-912 |
| Cow position: | chr5:30412666-30412405 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 668-791 |
| Cow position: | chr5:75036725-75036604 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 714-911 |
| Cow position: | chr5:44888119-44887921 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 149 |
| Conread position: | 720-911 |
| Cow position: | chr5:34607041-34607239 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 734-906 |
| Cow position: | chr5:66308906-66309066 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.