Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 442-716 |
| Cow position: | chr6:54879435-54879729 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 442-912 |
| Cow position: | chr6:59988226-59988694 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 447-826 |
| Cow position: | chr6:25809953-25810338 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 464-700 |
| Cow position: | chr6:32521697-32521462 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 471-723 |
| Cow position: | chr6:54084237-54084489 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 473-667 |
| Cow position: | chr6:35714305-35714112 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 475-846 |
| Cow position: | chr6:435188-434814 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 476-689 |
| Cow position: | chr6:49099267-49099491 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 486-705 |
| Cow position: | chr6:53148376-53148160 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 486-716 |
| Cow position: | chr6:39743707-39743921 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 486-716 |
| Cow position: | chr6:61211595-61211835 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-828 |
| Cow position: | chr6:34023279-34023623 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 293, 73 |
| Conread position: | 489-705 |
| Cow position: | chr6:61431878-61431651 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 492-701 |
| Cow position: | chr6:26125325-26125108 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 146 |
| Conread position: | 493-705 |
| Cow position: | chr6:55461660-55461888 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 493-777 |
| Cow position: | chr6:6379819-6380101 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 262, 50 |
| Conread position: | 494-705 |
| Cow position: | chr6:56674358-56674583 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 512-704 |
| Cow position: | chr6:25627532-25627736 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 519-704 |
| Cow position: | chr6:6812546-6812363 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 523-758 |
| Cow position: | chr6:39706563-39706323 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 524-777 |
| Cow position: | chr6:57965338-57965082 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 56, 83 |
| Conread position: | 524-826 |
| Cow position: | chr6:65185884-65186184 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 542-790 |
| Cow position: | chr6:1629953-1629704 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 558-836 |
| Cow position: | chr6:48024024-48024300 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 564-778 |
| Cow position: | chr6:54431388-54431184 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 587-781 |
| Cow position: | chr6:42989028-42988837 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 589-826 |
| Cow position: | chr6:19709730-19709496 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 596-824 |
| Cow position: | chr6:24304261-24304026 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 190, 157 |
| Conread position: | 642-859 |
| Cow position: | chr6:60174648-60174428 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 659-859 |
| Cow position: | chr6:49166793-49166590 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 659-891 |
| Cow position: | chr6:26938157-26938391 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 177, 55 |
| Conread position: | 659-905 |
| Cow position: | chr6:4066313-4066043 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 659-906 |
| Cow position: | chr6:58035593-58035348 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 659-907 |
| Cow position: | chr6:44109793-44110036 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 223, 50 |
| Conread position: | 659-912 |
| Cow position: | chr6:36146638-36146904 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 673-899 |
| Cow position: | chr6:45337285-45337060 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 170, 91 |
| Conread position: | 702-912 |
| Cow position: | chr6:60258204-60257993 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 708-912 |
| Cow position: | chr6:19012461-19012669 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 721-912 |
| Cow position: | chr6:35461338-35461530 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 721-912 |
| Cow position: | chr6:35620042-35619850 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 117, 54 |
Show alignments to all cow chromosomes.