Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 442-701 |
| Cow position: | chr7:12423423-12423695 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 447-699 |
| Cow position: | chr7:33932965-33933232 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 451-911 |
| Cow position: | chr7:32826830-32826362 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 481-689 |
| Cow position: | chr7:11952953-11953162 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 484-716 |
| Cow position: | chr7:76428-76189 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 486-704 |
| Cow position: | chr7:14214858-14214629 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 486-705 |
| Cow position: | chr7:14532541-14532327 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 486-705 |
| Cow position: | chr7:40457670-40457903 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 486-705 |
| Cow position: | chr7:61776794-61777017 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 486-723 |
| Cow position: | chr7:4543982-4544236 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 493-798 |
| Cow position: | chr7:1822453-1822756 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 497-716 |
| Cow position: | chr7:8040934-8041162 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 83, 8 |
| Conread position: | 505-705 |
| Cow position: | chr7:907534-907731 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 505-803 |
| Cow position: | chr7:55697397-55697114 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 510-716 |
| Cow position: | chr7:14420779-14420981 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 510-716 |
| Cow position: | chr7:37207120-37206913 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 523-705 |
| Cow position: | chr7:10035121-10035312 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 523-828 |
| Cow position: | chr7:38094993-38094685 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 524-684 |
| Cow position: | chr7:39174079-39174239 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 524-790 |
| Cow position: | chr7:8734587-8734862 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 524-819 |
| Cow position: | chr7:6320502-6320791 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 55 |
| Conread position: | 524-825 |
| Cow position: | chr7:14869539-14869226 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 524-826 |
| Cow position: | chr7:23456452-23456136 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 524-831 |
| Cow position: | chr7:28894688-28895002 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 525-845 |
| Cow position: | chr7:25852093-25851763 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 244 |
| Conread position: | 529-826 |
| Cow position: | chr7:2270496-2270188 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 534-825 |
| Cow position: | chr7:49211508-49211791 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 537-780 |
| Cow position: | chr7:49094179-49093943 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 538-689 |
| Cow position: | chr7:21926481-21926632 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 541-840 |
| Cow position: | chr7:16491953-16491653 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 551-789 |
| Cow position: | chr7:16702114-16701881 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 583-912 |
| Cow position: | chr7:13826436-13826747 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 585-912 |
| Cow position: | chr7:17220166-17219845 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 220 |
| Conread position: | 600-834 |
| Cow position: | chr7:28005357-28005128 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 623-788 |
| Cow position: | chr7:11431337-11431172 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 641-825 |
| Cow position: | chr7:10279261-10279082 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 657-912 |
| Cow position: | chr7:2127488-2127222 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 51, 236 |
| Conread position: | 657-912 |
| Cow position: | chr7:33468512-33468779 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 659-830 |
| Cow position: | chr7:45939860-45939687 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 659-831 |
| Cow position: | chr7:47884470-47884638 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 659-859 |
| Cow position: | chr7:32919258-32919048 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 659-906 |
| Cow position: | chr7:43899638-43899889 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 226 |
| Conread position: | 659-912 |
| Cow position: | chr7:5026380-5026642 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 659-912 |
| Cow position: | chr7:21994493-21994752 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 714-912 |
| Cow position: | chr7:28335658-28335457 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 721-906 |
| Cow position: | chr7:8106415-8106602 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 58 |
Show alignments to all cow chromosomes.