Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C080009.5 |
| Conread position: | 418-845 |
| Cow position: | chr9:61139562-61139986 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 293, 316 |
| Conread position: | 438-716 |
| Cow position: | chr9:52010008-52009723 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 447-826 |
| Cow position: | chr9:61312958-61312575 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 471-672 |
| Cow position: | chr9:45947337-45947137 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 475-705 |
| Cow position: | chr9:26734709-26734934 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 477-701 |
| Cow position: | chr9:35191477-35191715 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 486-689 |
| Cow position: | chr9:44327685-44327474 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 486-702 |
| Cow position: | chr9:38864416-38864188 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-704 |
| Cow position: | chr9:35837279-35837050 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 486-716 |
| Cow position: | chr9:5064588-5064347 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 489-705 |
| Cow position: | chr9:35183243-35183471 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 489-716 |
| Cow position: | chr9:48518793-48518557 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 490-716 |
| Cow position: | chr9:27372638-27372877 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 493-672 |
| Cow position: | chr9:61292353-61292170 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 493-702 |
| Cow position: | chr9:28850690-28850473 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 493-704 |
| Cow position: | chr9:4701190-4700984 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 14 |
| Conread position: | 494-706 |
| Cow position: | chr9:50683917-50684143 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 503-825 |
| Cow position: | chr9:21900424-21900118 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 505-716 |
| Cow position: | chr9:26700754-26700535 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 505-785 |
| Cow position: | chr9:7057035-7056757 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 274, 53 |
| Conread position: | 505-825 |
| Cow position: | chr9:61445621-61445937 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 505-828 |
| Cow position: | chr9:53332890-53332567 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 146 |
| Conread position: | 510-780 |
| Cow position: | chr9:6269579-6269315 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 510-826 |
| Cow position: | chr9:30111397-30111081 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 512-912 |
| Cow position: | chr9:1020934-1020536 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 524-767 |
| Cow position: | chr9:21103458-21103204 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 524-778 |
| Cow position: | chr9:31544847-31545107 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 92 |
| Conread position: | 524-780 |
| Cow position: | chr9:43833877-43834146 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 524-825 |
| Cow position: | chr9:48070098-48070414 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 551-802 |
| Cow position: | chr9:10888973-10889232 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 658-906 |
| Cow position: | chr9:36426065-36425814 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 659-788 |
| Cow position: | chr9:63662321-63662449 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 659-831 |
| Cow position: | chr9:25574535-25574371 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 659-906 |
| Cow position: | chr9:51279828-51279576 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 177, 32 |
| Conread position: | 659-906 |
| Cow position: | chr9:56082693-56082945 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 659-911 |
| Cow position: | chr9:21499756-21500009 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 659-912 |
| Cow position: | chr9:10290383-10290642 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 659-912 |
| Cow position: | chr9:23950582-23950844 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 659-912 |
| Cow position: | chr9:54107943-54108214 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 663-875 |
| Cow position: | chr9:46090663-46090879 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 664-906 |
| Cow position: | chr9:51277572-51277815 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 167 |
| Conread position: | 674-858 |
| Cow position: | chr9:26525681-26525491 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 714-911 |
| Cow position: | chr9:49458039-49457838 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 47 |
Show alignments to all cow chromosomes.