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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01C080083.5
        

               
Conread position:
               
233-672
               

               
Cow position:
               
chr11:25183392-25183843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 18
               

               
Conread position:
               
251-839
               

               
Cow position:
               
chr11:9248894-9248291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
252-623
               

               
Cow position:
               
chr11:40232006-40231637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
252-1026
               

               
Cow position:
               
chr11:49551662-49550860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
281-1035
               

               
Cow position:
               
chr11:85391466-85390696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
309-547
               

               
Cow position:
               
chr11:79485791-79485555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
321-1014
               

               
Cow position:
               
chr11:62575548-62574847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
330-576
               

               
Cow position:
               
chr11:75361395-75361152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
129, 123
               

               
Conread position:
               
330-621
               

               
Cow position:
               
chr11:23623786-23623497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
331-582
               

               
Cow position:
               
chr11:59626904-59626661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
332-439
               

               
Cow position:
               
chr11:65281061-65281168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-488
               

               
Cow position:
               
chr11:31749235-31749079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-534
               

               
Cow position:
               
chr11:37069913-37069705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
332-581
               

               
Cow position:
               
chr11:73466991-73466742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-639
               

               
Cow position:
               
chr11:72484793-72485100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 217
               

               
Conread position:
               
332-711
               

               
Cow position:
               
chr11:7228683-7229073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 336
               

               
Conread position:
               
332-845
               

               
Cow position:
               
chr11:10129320-10128796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 309
               

               
Conread position:
               
332-915
               

               
Cow position:
               
chr11:42372254-42372817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 94
               

               
Conread position:
               
332-915
               

               
Cow position:
               
chr11:52657225-52656637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 18
               

               
Conread position:
               
332-915
               

               
Cow position:
               
chr11:62224691-62225292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 92
               

               
Conread position:
               
332-989
               

               
Cow position:
               
chr11:67741605-67740902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 164
               

               
Conread position:
               
332-1004
               

               
Cow position:
               
chr11:66731573-66732262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 181
               

               
Conread position:
               
332-1020
               

               
Cow position:
               
chr11:21729576-21728870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 177
               

               
Conread position:
               
332-1023
               

               
Cow position:
               
chr11:25564185-25564905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 529
               

               
Conread position:
               
332-1027
               

               
Cow position:
               
chr11:10884715-10885431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 91
               

               
Conread position:
               
332-1034
               

               
Cow position:
               
chr11:17280152-17279442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 167
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:10850549-10851279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 410
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:11990418-11991165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 456
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:38833043-38832313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 53
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:40403331-40402607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 183
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:44154652-44153917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 135
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr11:67453084-67453819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 656
               

               
Conread position:
               
333-1026
               

               
Cow position:
               
chr11:15046907-15047616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
448, 0
               

               
Conread position:
               
333-1026
               

               
Cow position:
               
chr11:59871244-59871967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 248
               

               
Conread position:
               
334-982
               

               
Cow position:
               
chr11:78778666-78777994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 220
               

               
Conread position:
               
336-585
               

               
Cow position:
               
chr11:23124513-23124266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
8, 112
               

               
Conread position:
               
336-624
               

               
Cow position:
               
chr11:42310029-42309749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
336-858
               

               
Cow position:
               
chr11:72365621-72366166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 537
               

               
Conread position:
               
336-1023
               

               
Cow position:
               
chr11:74928233-74928950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 242
               

               
Conread position:
               
337-450
               

               
Cow position:
               
chr11:12950731-12950618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
337-510
               

               
Cow position:
               
chr11:68130044-68130216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 116
               

               
Conread position:
               
337-543
               

               
Cow position:
               
chr11:77765469-77765263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
162, 149
               

               
Conread position:
               
337-547
               

               
Cow position:
               
chr11:30210530-30210735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
337-576
               

               
Cow position:
               
chr11:8562555-8562795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
157, 170
               

               
Conread position:
               
337-577
               

               
Cow position:
               
chr11:16120002-16119765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
337-577
               

               
Cow position:
               
chr11:74346839-74347080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
52, 185
               

               
Conread position:
               
337-591
               

               
Cow position:
               
chr11:72869179-72869432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 87
               

               
Conread position:
               
337-592
               

               
Cow position:
               
chr11:38353415-38353672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 87
               

               
Conread position:
               
337-597
               

               
Cow position:
               
chr11:60701347-60701596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
337-609
               

               
Cow position:
               
chr11:8837252-8836988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
337-613
               

               
Cow position:
               
chr11:7108987-7108715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
337-622
               

               
Cow position:
               
chr11:31531584-31531858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chr11:27937838-27938118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
337-640
               

               
Cow position:
               
chr11:58819818-58820124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr11:3790229-3790530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 117
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr11:7375136-7375441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 225
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr11:8242692-8242389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 46
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr11:32025312-32025613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 43
               

               
Conread position:
               
337-644
               

               
Cow position:
               
chr11:7326686-7326992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
337-676
               

               
Cow position:
               
chr11:50136401-50136058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 255
               

               
Conread position:
               
337-706
               

               
Cow position:
               
chr11:82146208-82145842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
175, 158
               

               
Conread position:
               
337-708
               

               
Cow position:
               
chr11:32270739-32270346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
209, 342
               

               
Conread position:
               
337-711
               

               
Cow position:
               
chr11:17834141-17833758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 176
               

               
Conread position:
               
337-723
               

               
Cow position:
               
chr11:7320586-7320978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 94
               

               
Conread position:
               
337-757
               

               
Cow position:
               
chr11:18123852-18123417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chr11:15127249-15127686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 304
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chr11:36765100-36765542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 167
               

               
Conread position:
               
337-778
               

               
Cow position:
               
chr11:39483722-39484175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 51
               

               
Conread position:
               
337-786
               

               
Cow position:
               
chr11:10215178-10214711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
337-819
               

               
Cow position:
               
chr11:19072641-19073132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
337-823
               

               
Cow position:
               
chr11:81338952-81338452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 149
               

               
Conread position:
               
337-841
               

               
Cow position:
               
chr11:28393327-28393839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 155
               

               
Conread position:
               
337-857
               

               
Cow position:
               
chr11:9080114-9079585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 49
               

               
Conread position:
               
337-901
               

               
Cow position:
               
chr11:13045302-13044752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 90
               

               
Conread position:
               
337-903
               

               
Cow position:
               
chr11:60604528-60605115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
337-910
               

               
Cow position:
               
chr11:26561875-26561289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 166
               

               
Conread position:
               
337-914
               

               
Cow position:
               
chr11:44874907-44875512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
337-929
               

               
Cow position:
               
chr11:7380522-7381116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
337-960
               

               
Cow position:
               
chr11:80472502-80471873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
337-965
               

               
Cow position:
               
chr11:31627969-31628606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 87
               

               
Conread position:
               
337-982
               

               
Cow position:
               
chr11:45652471-45651810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 43
               

               
Conread position:
               
337-984
               

               
Cow position:
               
chr11:30190216-30190861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 96
               

               
Conread position:
               
337-985
               

               
Cow position:
               
chr11:40486600-40487264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
337-986
               

               
Cow position:
               
chr11:34022382-34023017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 174
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chr11:26785689-26786355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 159
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chr11:27056265-27055589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 24
               

               
Conread position:
               
337-995
               

               
Cow position:
               
chr11:44232872-44233547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 133
               

               
Conread position:
               
337-999
               

               
Cow position:
               
chr11:26534275-26534962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 45
               

               
Conread position:
               
337-1001
               

               
Cow position:
               
chr11:18147111-18146417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 176
               

               
Conread position:
               
337-1019
               

               
Cow position:
               
chr11:41101358-41102062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 140
               

               
Conread position:
               
337-1019
               

               
Cow position:
               
chr11:45549582-45550271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chr11:2834711-2835418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 45
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:260700-259987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 105
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:18068362-18067664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:49037952-49037255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 34
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:49237528-49236818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 51
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:50949393-50950107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 104
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr11:60824220-60824930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr11:8018200-8018914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 177
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr11:49556894-49556172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 88
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr11:53308461-53307745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr11:76565884-76566623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
337-1029
               

               
Cow position:
               
chr11:77777584-77776895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 155
               

               
Conread position:
               
337-1030
               

               
Cow position:
               
chr11:27834326-27833596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
337-1036
               

               
Cow position:
               
chr11:69167690-69168418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
337-1036
               

               
Cow position:
               
chr11:86578361-86579092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 365
               

               
Conread position:
               
337-1040
               

               
Cow position:
               
chr11:28693532-28692803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
338-568
               

               
Cow position:
               
chr11:15994594-15994839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
338-622
               

               
Cow position:
               
chr11:39789558-39789274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
338-632
               

               
Cow position:
               
chr11:1403437-1403143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
338-642
               

               
Cow position:
               
chr11:7332381-7332686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
241, 87
               

               
Conread position:
               
338-642
               

               
Cow position:
               
chr11:10869934-10870239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
57, 158
               

               
Conread position:
               
338-698
               

               
Cow position:
               
chr11:59470744-59471110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
338-783
               

               
Cow position:
               
chr11:3229557-3230011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 234
               

               
Conread position:
               
338-862
               

               
Cow position:
               
chr11:20494657-20494125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 305
               

               
Conread position:
               
338-902
               

               
Cow position:
               
chr11:7379008-7379593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 23
               

               
Conread position:
               
338-1020
               

               
Cow position:
               
chr11:21887992-21887313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
338-1027
               

               
Cow position:
               
chr11:25809308-25808592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 526
               

               
Conread position:
               
338-1035
               

               
Cow position:
               
chr11:27659686-27660404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
339-491
               

               
Cow position:
               
chr11:49012624-49012471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
339-502
               

               
Cow position:
               
chr11:41744997-41745160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-525
               

               
Cow position:
               
chr11:37280252-37280066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr11:41235111-41235298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-539
               

               
Cow position:
               
chr11:77236091-77236287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
339-545
               

               
Cow position:
               
chr11:9387357-9387155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
339-558
               

               
Cow position:
               
chr11:5387907-5388128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
339-563
               

               
Cow position:
               
chr11:41192277-41192053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-565
               

               
Cow position:
               
chr11:25098733-25098507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-567
               

               
Cow position:
               
chr11:40457354-40457581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
339-570
               

               
Cow position:
               
chr11:52421905-52422136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-575
               

               
Cow position:
               
chr11:9732238-9731990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
339-575
               

               
Cow position:
               
chr11:13088094-13088330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-584
               

               
Cow position:
               
chr11:24494294-24494539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
239, 232
               

               
Conread position:
               
339-601
               

               
Cow position:
               
chr11:28666971-28667232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
339-605
               

               
Cow position:
               
chr11:23882471-23882738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
339-619
               

               
Cow position:
               
chr11:9154751-9154474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 215
               

               
Conread position:
               
339-622
               

               
Cow position:
               
chr11:30254667-30254940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
339-636
               

               
Cow position:
               
chr11:65001705-65002000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
339-639
               

               
Cow position:
               
chr11:39585285-39584984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-642
               

               
Cow position:
               
chr11:84386365-84386068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 109
               

               
Conread position:
               
339-673
               

               
Cow position:
               
chr11:47737109-47736770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-704
               

               
Cow position:
               
chr11:15987689-15988062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 65
               

               
Conread position:
               
339-713
               

               
Cow position:
               
chr11:77748216-77748600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 132
               

               
Conread position:
               
339-739
               

               
Cow position:
               
chr11:30104756-30104350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
339-799
               

               
Cow position:
               
chr11:66859896-66859422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
339-816
               

               
Cow position:
               
chr11:38600501-38600024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-819
               

               
Cow position:
               
chr11:72312893-72313388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 114
               

               
Conread position:
               
339-825
               

               
Cow position:
               
chr11:39806132-39806629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
339-830
               

               
Cow position:
               
chr11:44515338-44514827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
339-836
               

               
Cow position:
               
chr11:4032996-4032493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
339-854
               

               
Cow position:
               
chr11:61848297-61847758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-859
               

               
Cow position:
               
chr11:76371629-76371091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 401
               

               
Conread position:
               
339-860
               

               
Cow position:
               
chr11:14734944-14734409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 287
               

               
Conread position:
               
339-866
               

               
Cow position:
               
chr11:56917567-56917026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 159
               

               
Conread position:
               
339-881
               

               
Cow position:
               
chr11:24395770-24396334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 516
               

               
Conread position:
               
339-901
               

               
Cow position:
               
chr11:35862191-35861632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 172
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr11:32478376-32477776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 294
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr11:41177365-41177952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 9
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr11:44516734-44516141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 516
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr11:64353886-64353286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-976
               

               
Cow position:
               
chr11:75403061-75402403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 147
               

               
Conread position:
               
339-990
               

               
Cow position:
               
chr11:7121527-7120842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-990
               

               
Cow position:
               
chr11:29663613-29662933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 503
               

               
Conread position:
               
339-998
               

               
Cow position:
               
chr11:50834322-50833630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 227
               

               
Conread position:
               
339-998
               

               
Cow position:
               
chr11:63653243-63652548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 327
               

               
Conread position:
               
339-1004
               

               
Cow position:
               
chr11:17105253-17104567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 440
               

               
Conread position:
               
339-1005
               

               
Cow position:
               
chr11:26399918-26400617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 175
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chr11:58136154-58136862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 9
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chr11:63391040-63390337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 154
               

               
Conread position:
               
339-1015
               

               
Cow position:
               
chr11:31928904-31929586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 117
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr11:7318468-7319172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 182
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr11:26122485-26121766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 0
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr11:28227343-28226625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 711
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr11:58050484-58049773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr11:61398177-61397467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 141
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:4267715-4266998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 127
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:8444551-8443834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 652
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:9707584-9708305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:10093319-10094026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 191
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:10699310-10698589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:17548594-17549315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:19061638-19060917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:23494202-23494902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:28124951-28125670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 636
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:32454497-32455211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 228
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:33000328-33001028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 97
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:50511236-50510515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:57625738-57625033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 85
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:58139146-58139851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 150
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr11:73799263-73798545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 465
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chr11:15835357-15836068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 112
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chr11:83284332-83285039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 158
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:3495479-3496209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 107
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:4024905-4024189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 206
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:10958257-10958995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 76
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:11591421-11592146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 61
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:19100047-19099319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 221
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:20731786-20731057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 723
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:21897256-21896537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 244
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:26549917-26550642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 235
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:27725464-27724735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 94
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:30201253-30200533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 49
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:31865054-31865802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 591
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:32078343-32077617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 474
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:33602192-33601473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 456
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:35542632-35541904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 660
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:35738906-35738178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 545
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:38575046-38574319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 155
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:40773593-40772904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 167
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:41168258-41167528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:43511535-43510809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:44254511-44255239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 114
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:44580793-44580068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 86
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:47973415-47972686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 252
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:49172064-49171330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 692
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:53429585-53428857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 173
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:54727900-54728629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:63861200-63860478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 271
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:67296572-67295841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 244
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:71331938-71332665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 690
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr11:84966550-84967274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chr11:56462797-56463531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
339-1041
               

               
Cow position:
               
chr11:4053875-4053180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 191
               

               
Conread position:
               
339-1041
               

               
Cow position:
               
chr11:38640387-38641121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 160
               

               
Conread position:
               
340-563
               

               
Cow position:
               
chr11:4061452-4061236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
340-624
               

               
Cow position:
               
chr11:14260610-14260327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
340-639
               

               
Cow position:
               
chr11:66945895-66945598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
340-642
               

               
Cow position:
               
chr11:15720289-15719981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
340-778
               

               
Cow position:
               
chr11:5982568-5983000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 82
               

               
Conread position:
               
340-811
               

               
Cow position:
               
chr11:2534036-2534531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 0
               

               
Conread position:
               
340-1035
               

               
Cow position:
               
chr11:12354456-12353726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
341-638
               

               
Cow position:
               
chr11:7385855-7386154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
341-959
               

               
Cow position:
               
chr11:39600423-39599760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
341-1035
               

               
Cow position:
               
chr11:12317632-12316904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 0
               

               
Conread position:
               
343-1035
               

               
Cow position:
               
chr11:6342901-6343625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 504
               

               
Conread position:
               
346-1035
               

               
Cow position:
               
chr11:1505553-1504830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 188
               

               
Conread position:
               
347-621
               

               
Cow position:
               
chr11:13049499-13049235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
347-991
               

               
Cow position:
               
chr11:7680408-7681083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 505
               

               
Conread position:
               
347-1023
               

               
Cow position:
               
chr11:59005104-59004421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 9
               

               
Conread position:
               
348-990
               

               
Cow position:
               
chr11:59601056-59601708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 93
               

               
Conread position:
               
348-1026
               

               
Cow position:
               
chr11:41313741-41314452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 567
               

               
Conread position:
               
348-1040
               

               
Cow position:
               
chr11:75511747-75511016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 0
               

               
Conread position:
               
350-1026
               

               
Cow position:
               
chr11:27922242-27922953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 68
               

               
Conread position:
               
351-875
               

               
Cow position:
               
chr11:79749435-79748886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
353-1035
               

               
Cow position:
               
chr11:11256522-11257213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 547
               

               
Conread position:
               
356-758
               

               
Cow position:
               
chr11:56891762-56891346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 138
               

               
Conread position:
               
357-759
               

               
Cow position:
               
chr11:38068723-38069141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
357-897
               

               
Cow position:
               
chr11:45107296-45107872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
358-713
               

               
Cow position:
               
chr11:9238560-9238923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
94, 155
               

               
Conread position:
               
360-526
               

               
Cow position:
               
chr11:37116873-37117039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-642
               

               
Cow position:
               
chr11:5280492-5280777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 226
               

               
Conread position:
               
361-604
               

               
Cow position:
               
chr11:27283446-27283689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
361-915
               

               
Cow position:
               
chr11:60757515-60756943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 107
               

               
Conread position:
               
364-601
               

               
Cow position:
               
chr11:3310429-3310660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
364-622
               

               
Cow position:
               
chr11:66568512-66568771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
364-783
               

               
Cow position:
               
chr11:35263339-35262904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
364-1014
               

               
Cow position:
               
chr11:20805376-20804718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
228, 129
               

               
Conread position:
               
364-1026
               

               
Cow position:
               
chr11:67863814-67863130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 128
               

               
Conread position:
               
365-913
               

               
Cow position:
               
chr11:50266857-50267422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
365-989
               

               
Cow position:
               
chr11:21477074-21477700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 59
               

               
Conread position:
               
365-1044
               

               
Cow position:
               
chr11:22934135-22933453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 71
               

               
Conread position:
               
366-705
               

               
Cow position:
               
chr11:85731501-85731156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 96
               

               
Conread position:
               
366-915
               

               
Cow position:
               
chr11:2568210-2567647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 128
               

               
Conread position:
               
366-1020
               

               
Cow position:
               
chr11:3682371-3681694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 156
               

               
Conread position:
               
367-621
               

               
Cow position:
               
chr11:42520426-42520179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
368-553
               

               
Cow position:
               
chr11:9431665-9431855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
369-1056
               

               
Cow position:
               
chr11:48981762-48982471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 184
               

               
Conread position:
               
371-612
               

               
Cow position:
               
chr11:26747619-26747857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
371-747
               

               
Cow position:
               
chr11:56652987-56652582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
371-846
               

               
Cow position:
               
chr11:8245633-8246133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 0
               

               
Conread position:
               
371-1026
               

               
Cow position:
               
chr11:41600220-41599531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 617
               

               
Conread position:
               
373-1026
               

               
Cow position:
               
chr11:14468997-14469655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 27
               

               
Conread position:
               
375-504
               

               
Cow position:
               
chr11:58948323-58948453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
379-642
               

               
Cow position:
               
chr11:46777762-46777499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
253, 238
               

               
Conread position:
               
379-889
               

               
Cow position:
               
chr11:7373923-7374452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 232
               

               
Conread position:
               
379-1026
               

               
Cow position:
               
chr11:35142855-35142175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 253
               

               
Conread position:
               
382-916
               

               
Cow position:
               
chr11:60223207-60222649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 0
               

               
Conread position:
               
382-990
               

               
Cow position:
               
chr11:75553306-75552677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 42
               

               
Conread position:
               
385-642
               

               
Cow position:
               
chr11:13063126-13062869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
385-941
               

               
Cow position:
               
chr11:67954655-67954057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 465
               

               
Conread position:
               
385-1038
               

               
Cow position:
               
chr11:4205663-4206341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 223
               

               
Conread position:
               
388-622
               

               
Cow position:
               
chr11:38701858-38702091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
390-570
               

               
Cow position:
               
chr11:33107049-33107233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
390-1023
               

               
Cow position:
               
chr11:48168576-48167927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 149
               

               
Conread position:
               
397-642
               

               
Cow position:
               
chr11:81923034-81922794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
397-759
               

               
Cow position:
               
chr11:33042256-33041896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 252
               

               
Conread position:
               
398-713
               

               
Cow position:
               
chr11:46781833-46781509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 17
               

               
Conread position:
               
400-503
               

               
Cow position:
               
chr11:69655679-69655781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
403-661
               

               
Cow position:
               
chr11:21853635-21853378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
404-1026
               

               
Cow position:
               
chr11:72368554-72369211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 229
               

               
Conread position:
               
411-900
               

               
Cow position:
               
chr11:43992271-43991768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 34
               

               
Conread position:
               
412-631
               

               
Cow position:
               
chr11:73136843-73137061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
412-915
               

               
Cow position:
               
chr11:8266324-8266851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 77
               

               
Conread position:
               
413-852
               

               
Cow position:
               
chr11:14650276-14650744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
413-1023
               

               
Cow position:
               
chr11:31892465-31893093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
207, 40
               

               
Conread position:
               
419-1026
               

               
Cow position:
               
chr11:417937-417316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 70
               

               
Conread position:
               
420-673
               

               
Cow position:
               
chr11:8201214-8200956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
424-1026
               

               
Cow position:
               
chr11:84773692-84774322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
427-905
               

               
Cow position:
               
chr11:52462806-52463306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 86
               

               
Conread position:
               
429-622
               

               
Cow position:
               
chr11:45853416-45853222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
433-776
               

               
Cow position:
               
chr11:66739686-66739329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 30
               

               
Conread position:
               
436-801
               

               
Cow position:
               
chr11:48740389-48740018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
196, 47
               

               
Conread position:
               
436-1004
               

               
Cow position:
               
chr11:1493312-1492725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 143
               

               
Conread position:
               
436-1027
               

               
Cow position:
               
chr11:36930998-36930376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
443-624
               

               
Cow position:
               
chr11:62040997-62041178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
443-1025
               

               
Cow position:
               
chr11:65281559-65282166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 360
               

               
Conread position:
               
446-642
               

               
Cow position:
               
chr11:12411201-12411396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
455-783
               

               
Cow position:
               
chr11:46687552-46687886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
455-814
               

               
Cow position:
               
chr11:83287177-83286803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
455-1023
               

               
Cow position:
               
chr11:29012777-29013354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
169, 40
               

               
Conread position:
               
455-1026
               

               
Cow position:
               
chr11:30928934-30929539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
462-911
               

               
Cow position:
               
chr11:67167301-67166829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
463-901
               

               
Cow position:
               
chr11:81577341-81576887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 5
               

               
Conread position:
               
463-1023
               

               
Cow position:
               
chr11:58398893-58399480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 124
               

               
Conread position:
               
464-612
               

               
Cow position:
               
chr11:59369436-59369287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
464-623
               

               
Cow position:
               
chr11:7719980-7719828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
136, 95
               

               
Conread position:
               
464-964
               

               
Cow position:
               
chr11:29613953-29614487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 169
               

               
Conread position:
               
464-1026
               

               
Cow position:
               
chr11:57754643-57754064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
464-1035
               

               
Cow position:
               
chr11:18921022-18920432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 25
               

               
Conread position:
               
466-985
               

               
Cow position:
               
chr11:1285557-1285006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 48
               

               
Conread position:
               
470-640
               

               
Cow position:
               
chr11:33185622-33185453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
474-668
               

               
Cow position:
               
chr11:32402288-32402089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
482-1035
               

               
Cow position:
               
chr11:5482865-5482280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 55
               

               
Conread position:
               
486-758
               

               
Cow position:
               
chr11:53690201-53690481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
487-712
               

               
Cow position:
               
chr11:38021892-38021655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
490-1035
               

               
Cow position:
               
chr11:67920745-67920176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 482
               

               
Conread position:
               
491-1023
               

               
Cow position:
               
chr11:16230066-16229498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
495-1026
               

               
Cow position:
               
chr11:41261336-41260771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
496-1023
               

               
Cow position:
               
chr11:39151192-39151753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 75
               

               
Conread position:
               
497-783
               

               
Cow position:
               
chr11:3085614-3085315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
505-1031
               

               
Cow position:
               
chr11:33688417-33687888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
516-1035
               

               
Cow position:
               
chr11:73513748-73513207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
518-669
               

               
Cow position:
               
chr11:37676816-37676972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
519-1026
               

               
Cow position:
               
chr11:67599200-67599728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
520-1023
               

               
Cow position:
               
chr11:46412266-46412789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 224
               

               
Conread position:
               
523-783
               

               
Cow position:
               
chr11:37069574-37069313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
523-1020
               

               
Cow position:
               
chr11:58805196-58804671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 88
               

               
Conread position:
               
523-1023
               

               
Cow position:
               
chr11:8830155-8829631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 263
               

               
Conread position:
               
524-1026
               

               
Cow position:
               
chr11:12177708-12178245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
525-1035
               

               
Cow position:
               
chr11:33733955-33733420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
526-783
               

               
Cow position:
               
chr11:37117697-37117966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
106, 135
               

               
Conread position:
               
526-1026
               

               
Cow position:
               
chr11:26068495-26067953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
527-762
               

               
Cow position:
               
chr11:12493982-12493730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
529-621
               

               
Cow position:
               
chr11:54387299-54387391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
529-1014
               

               
Cow position:
               
chr11:48485448-48484929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 211
               

               
Conread position:
               
529-1040
               

               
Cow position:
               
chr11:15995112-15995664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
530-905
               

               
Cow position:
               
chr11:29616668-29616282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 271
               

               
Conread position:
               
530-1035
               

               
Cow position:
               
chr11:52846104-52846641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 179
               

               
Conread position:
               
532-1035
               

               
Cow position:
               
chr11:14260329-14259795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 211
               

               
Conread position:
               
534-714
               

               
Cow position:
               
chr11:41725245-41725434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
537-1026
               

               
Cow position:
               
chr11:2285347-2285870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
537-1035
               

               
Cow position:
               
chr11:80789762-80789224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
541-1020
               

               
Cow position:
               
chr11:61426332-61426825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 228
               

               
Conread position:
               
542-1026
               

               
Cow position:
               
chr11:44106315-44106839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 310
               

               
Conread position:
               
545-1026
               

               
Cow position:
               
chr11:24494166-24493651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
545-1026
               

               
Cow position:
               
chr11:28631175-28631690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
551-1026
               

               
Cow position:
               
chr11:9387984-9388494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 163
               

               
Conread position:
               
551-1027
               

               
Cow position:
               
chr11:76767066-76767574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 434
               

               
Conread position:
               
552-1026
               

               
Cow position:
               
chr11:51033936-51034433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 184
               

               
Conread position:
               
553-990
               

               
Cow position:
               
chr11:28598233-28597767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 184
               

               
Conread position:
               
555-777
               

               
Cow position:
               
chr11:32254605-32254844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 200
               

               
Conread position:
               
560-1019
               

               
Cow position:
               
chr11:40457835-40458326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
563-915
               

               
Cow position:
               
chr11:40134148-40133787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
566-1026
               

               
Cow position:
               
chr11:22618283-22617789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
566-1035
               

               
Cow position:
               
chr11:7719852-7719349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 325
               

               
Conread position:
               
567-1027
               

               
Cow position:
               
chr11:73466535-73466052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
569-1026
               

               
Cow position:
               
chr11:32876277-32875786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
569-1026
               

               
Cow position:
               
chr11:37279910-37279424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 276
               

               
Conread position:
               
570-1026
               

               
Cow position:
               
chr11:49936073-49935591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 171
               

               
Conread position:
               
571-1026
               

               
Cow position:
               
chr11:17853762-17854251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
571-1042
               

               
Cow position:
               
chr11:40015846-40016342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
572-783
               

               
Cow position:
               
chr11:29547487-29547705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 169
               

               
Conread position:
               
573-1027
               

               
Cow position:
               
chr11:1667296-1667779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 193
               

               
Conread position:
               
574-1003
               

               
Cow position:
               
chr11:7376721-7377154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
577-1014
               

               
Cow position:
               
chr11:81067423-81067884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 226
               

               
Conread position:
               
577-1035
               

               
Cow position:
               
chr11:62791569-62792060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 434
               

               
Conread position:
               
578-1026
               

               
Cow position:
               
chr11:38600025-38599557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 87
               

               
Conread position:
               
579-994
               

               
Cow position:
               
chr11:3795915-3796356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 184
               

               
Conread position:
               
583-1020
               

               
Cow position:
               
chr11:10365709-10365251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 186
               

               
Conread position:
               
583-1020
               

               
Cow position:
               
chr11:17980611-17980143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 390
               

               
Conread position:
               
584-1026
               

               
Cow position:
               
chr11:13087986-13087510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
587-983
               

               
Cow position:
               
chr11:38793271-38793691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
42, 216
               

               
Conread position:
               
591-1035
               

               
Cow position:
               
chr11:15495079-15495554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
591-1037
               

               
Cow position:
               
chr11:25335828-25336306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 176
               

               
Conread position:
               
592-1023
               

               
Cow position:
               
chr11:42357894-42358345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 169
               

               
Conread position:
               
593-1043
               

               
Cow position:
               
chr11:41106698-41106219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
594-1026
               

               
Cow position:
               
chr11:10872134-10871668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
598-1035
               

               
Cow position:
               
chr11:19507026-19507491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 237
               

               
Conread position:
               
602-1026
               

               
Cow position:
               
chr11:30056911-30057352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
606-1020
               

               
Cow position:
               
chr11:75353906-75354358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
611-1037
               

               
Cow position:
               
chr11:43362005-43361563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
619-904
               

               
Cow position:
               
chr11:45633380-45633081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
639-1026
               

               
Cow position:
               
chr11:44915945-44915527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 360
               

               
Conread position:
               
639-1035
               

               
Cow position:
               
chr11:48427889-48428309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 187
               

               
Conread position:
               
652-811
               

               
Cow position:
               
chr11:45102735-45102557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-873
               

               
Cow position:
               
chr11:19271508-19271270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-915
               

               
Cow position:
               
chr11:23896274-23896556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
652-915
               

               
Cow position:
               
chr11:57185119-57185401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-956
               

               
Cow position:
               
chr11:25864846-25864529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
652-975
               

               
Cow position:
               
chr11:73137345-73137697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-997
               

               
Cow position:
               
chr11:59444792-59444418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1023
               

               
Cow position:
               
chr11:5273820-5273420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1023
               

               
Cow position:
               
chr11:17998177-17997780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 231
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr11:9154142-9153748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
19, 344
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr11:24334239-24333836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr11:30776717-30777120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1035
               

               
Cow position:
               
chr11:34638750-34638338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1035
               

               
Cow position:
               
chr11:41094108-41093696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
659-901
               

               
Cow position:
               
chr11:41229231-41228981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
661-989
               

               
Cow position:
               
chr11:35242100-35241749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
667-1027
               

               
Cow position:
               
chr11:9870277-9870658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
668-1013
               

               
Cow position:
               
chr11:8551585-8551949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
670-1013
               

               
Cow position:
               
chr11:13062628-13062263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
672-909
               

               
Cow position:
               
chr11:18438729-18438977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-915
               

               
Cow position:
               
chr11:8494284-8494538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
672-915
               

               
Cow position:
               
chr11:24600771-24601018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
672-990
               

               
Cow position:
               
chr11:12077620-12077283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 153
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chr11:27284218-27284589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chr11:63478632-63479004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 359
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chr11:77746426-77746052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr11:12763408-12763030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
41, 345
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr11:20285837-20285461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr11:63167717-63167366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr11:65760825-65760450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr11:83000810-83001186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chr11:3238082-3238468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chr11:16548169-16547784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chr11:21471414-21471788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chr11:26592996-26592611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1037
               

               
Cow position:
               
chr11:34297282-34297651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 57
               

               
Conread position:
               
672-1038
               

               
Cow position:
               
chr11:27938389-27938762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 257
               

               
Conread position:
               
673-1038
               

               
Cow position:
               
chr11:17782245-17781862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 230
               

               
Conread position:
               
674-1026
               

               
Cow position:
               
chr11:11316049-11315672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
674-1035
               

               
Cow position:
               
chr11:25759536-25759908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 194
               

               
Conread position:
               
674-1035
               

               
Cow position:
               
chr11:67849198-67848806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
675-904
               

               
Cow position:
               
chr11:33319336-33319094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
677-1026
               

               
Cow position:
               
chr11:74990406-74990777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
681-915
               

               
Cow position:
               
chr11:10043293-10043047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
683-990
               

               
Cow position:
               
chr11:59369241-59368914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
684-1023
               

               
Cow position:
               
chr11:4675822-4675479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 142
               

               
Conread position:
               
688-1011
               

               
Cow position:
               
chr11:87155195-87154868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
688-1026
               

               
Cow position:
               
chr11:54302334-54302694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
693-842
               

               
Cow position:
               
chr11:24873169-24873011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
693-1023
               

               
Cow position:
               
chr11:80591162-80591511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
696-864
               

               
Cow position:
               
chr11:24584722-24584896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
696-913
               

               
Cow position:
               
chr11:65852352-65852123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
704-965
               

               
Cow position:
               
chr11:7704516-7704791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
713-956
               

               
Cow position:
               
chr11:35425992-35425743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
713-958
               

               
Cow position:
               
chr11:81317048-81316791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
713-960
               

               
Cow position:
               
chr11:52128037-52128300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
713-990
               

               
Cow position:
               
chr11:67744216-67744503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
713-1010
               

               
Cow position:
               
chr11:66390179-66389870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 247
               

               
Conread position:
               
713-1014
               

               
Cow position:
               
chr11:59583258-59583575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr11:47573702-47573379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr11:75711425-75711096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr11:77748896-77749208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr11:23883175-23883513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr11:30255261-30255604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr11:46781240-46780904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 256
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr11:62009974-62009635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
713-1036
               

               
Cow position:
               
chr11:17832365-17832041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
196, 77
               

               
Conread position:
               
713-1040
               

               
Cow position:
               
chr11:84532432-84532097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
714-1020
               

               
Cow position:
               
chr11:67348286-67347966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
714-1026
               

               
Cow position:
               
chr11:8366389-8366717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
714-1035
               

               
Cow position:
               
chr11:4061110-4060787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 76
               

               
Conread position:
               
714-1038
               

               
Cow position:
               
chr11:46583579-46583243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
714-1040
               

               
Cow position:
               
chr11:52515353-52515678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
715-1026
               

               
Cow position:
               
chr11:38505401-38505074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
715-1035
               

               
Cow position:
               
chr11:7229190-7229526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
715-1035
               

               
Cow position:
               
chr11:21619971-21620307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
716-1023
               

               
Cow position:
               
chr11:58211555-58211243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 111
               

               
Conread position:
               
716-1026
               

               
Cow position:
               
chr11:30700325-30700651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
717-983
               

               
Cow position:
               
chr11:18147795-18147516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
720-985
               

               
Cow position:
               
chr11:12009915-12010186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
720-1014
               

               
Cow position:
               
chr11:15988123-15988433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
721-1020
               

               
Cow position:
               
chr11:8844014-8844330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
723-995
               

               
Cow position:
               
chr11:48169784-48169509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
725-1035
               

               
Cow position:
               
chr11:5584596-5584279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
54, 124
               

               
Conread position:
               
730-1038
               

               
Cow position:
               
chr11:31836035-31836353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
735-914
               

               
Cow position:
               
chr11:4396940-4396761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
739-1026
               

               
Cow position:
               
chr11:56652385-56652085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
739-1035
               

               
Cow position:
               
chr11:70030275-70030585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
740-1030
               

               
Cow position:
               
chr11:26482427-26482731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
743-1035
               

               
Cow position:
               
chr11:30164430-30164737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
37, 210
               

               
Conread position:
               
744-956
               

               
Cow position:
               
chr11:31487091-31487311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
745-1035
               

               
Cow position:
               
chr11:9432250-9432540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
746-1040
               

               
Cow position:
               
chr11:68130272-68130572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 238
               

               
Conread position:
               
750-1020
               

               
Cow position:
               
chr11:45155882-45155597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 220
               

               
Conread position:
               
750-1036
               

               
Cow position:
               
chr11:3999625-3999334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 90
               

               
Conread position:
               
754-990
               

               
Cow position:
               
chr11:66899223-66898976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
755-1026
               

               
Cow position:
               
chr11:31834391-31834104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
756-1002
               

               
Cow position:
               
chr11:7151871-7152133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
766-1023
               

               
Cow position:
               
chr11:38235882-38235616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
105, 112
               

               
Conread position:
               
773-1026
               

               
Cow position:
               
chr11:30087772-30088033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
775-1035
               

               
Cow position:
               
chr11:3230220-3230486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
777-1011
               

               
Cow position:
               
chr11:42517237-42517481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
778-980
               

               
Cow position:
               
chr11:15128677-15128891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
778-1020
               

               
Cow position:
               
chr11:38069194-38069449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 164
               

               
Conread position:
               
778-1023
               

               
Cow position:
               
chr11:28381570-28381821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
778-1026
               

               
Cow position:
               
chr11:48411423-48411685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
778-1027
               

               
Cow position:
               
chr11:69403322-69403065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
778-1035
               

               
Cow position:
               
chr11:21853352-21853085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
780-989
               

               
Cow position:
               
chr11:56891763-56891963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
780-1026
               

               
Cow position:
               
chr11:44893973-44893718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chr11:2294158-2293903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chr11:4734185-4734440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chr11:32762354-32762609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chr11:44870428-44870676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
781-1037
               

               
Cow position:
               
chr11:56227831-56228097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
782-1020
               

               
Cow position:
               
chr11:1626251-1626007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr11:32108679-32108932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
786-1035
               

               
Cow position:
               
chr11:43917339-43917600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
15, 193
               

               
Conread position:
               
788-1002
               

               
Cow position:
               
chr11:32978093-32977868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
788-1003
               

               
Cow position:
               
chr11:32956907-32956681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
788-1014
               

               
Cow position:
               
chr11:21372172-21371936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
789-1027
               

               
Cow position:
               
chr11:30194395-30194635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 88
               

               
Conread position:
               
789-1027
               

               
Cow position:
               
chr11:47758078-47757830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
790-1023
               

               
Cow position:
               
chr11:12111838-12112080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
119, 160
               

               
Conread position:
               
790-1026
               

               
Cow position:
               
chr11:67746324-67746569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
792-1026
               

               
Cow position:
               
chr11:75256103-75256347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
794-1035
               

               
Cow position:
               
chr11:8246107-8246349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
795-1023
               

               
Cow position:
               
chr11:23904198-23904436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
795-1026
               

               
Cow position:
               
chr11:61132037-61131796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
795-1026
               

               
Cow position:
               
chr11:66944275-66944052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
795-1026
               

               
Cow position:
               
chr11:77034176-77033935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
803-1026
               

               
Cow position:
               
chr11:53772606-53772824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 86
               

               
Conread position:
               
803-1026
               

               
Cow position:
               
chr11:74389123-74389356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
805-1019
               

               
Cow position:
               
chr11:7386342-7386556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
806-1020
               

               
Cow position:
               
chr11:38638398-38638177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
806-1024
               

               
Cow position:
               
chr11:70602350-70602128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
806-1026
               

               
Cow position:
               
chr11:2801332-2801102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
806-1027
               

               
Cow position:
               
chr11:77236789-77237022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
808-1035
               

               
Cow position:
               
chr11:8498996-8499232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
811-1051
               

               
Cow position:
               
chr11:42794009-42793756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 196
               

               
Conread position:
               
814-1026
               

               
Cow position:
               
chr11:38842561-38842777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 159
               

               
Conread position:
               
815-1035
               

               
Cow position:
               
chr11:70424328-70424556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
817-1026
               

               
Cow position:
               
chr11:52298225-52298005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
818-1035
               

               
Cow position:
               
chr11:63261268-63261040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
826-1037
               

               
Cow position:
               
chr11:53280452-53280232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
827-1010
               

               
Cow position:
               
chr11:38097782-38097595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
827-1027
               

               
Cow position:
               
chr11:66859040-66858830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
833-1008
               

               
Cow position:
               
chr11:17891671-17891497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
835-1035
               

               
Cow position:
               
chr11:48658687-48658896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
839-1026
               

               
Cow position:
               
chr11:47845726-47845923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
839-1035
               

               
Cow position:
               
chr11:31236439-31236237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
839-1035
               

               
Cow position:
               
chr11:37345903-37346109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
845-1011
               

               
Cow position:
               
chr11:24045794-24045618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
845-1026
               

               
Cow position:
               
chr11:46143020-46142829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
849-1023
               

               
Cow position:
               
chr11:14650266-14650082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
854-1035
               

               
Cow position:
               
chr11:56916747-56916557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
856-1031
               

               
Cow position:
               
chr11:33687496-33687311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
857-1026
               

               
Cow position:
               
chr11:33189549-33189728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
864-1026
               

               
Cow position:
               
chr11:4596552-4596724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
864-1026
               

               
Cow position:
               
chr11:50282425-50282253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
864-1029
               

               
Cow position:
               
chr11:71078415-71078583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 135
               

               
Conread position:
               
872-1026
               

               
Cow position:
               
chr11:76370847-76370683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
873-1026
               

               
Cow position:
               
chr11:10100042-10100205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
878-1043
               

               
Cow position:
               
chr11:21820391-21820226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
884-1026
               

               
Cow position:
               
chr11:40139555-40139414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
912-1034
               

               
Cow position:
               
chr11:29949294-29949171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
913-1040
               

               
Cow position:
               
chr11:45632914-45632788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
919-1026
               

               
Cow position:
               
chr11:79995700-79995593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.