Cow genome map

Conread name: Ss1.1-LyN1-MLN01C080083.5

Conread position: 227-1016
Cow position: chr17:15307894-15307109 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 232-1020
Cow position: chr17:4481385-4480571 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 35

Conread position: 252-608
Cow position: chr17:14294070-14293725 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 104, 41

Conread position: 271-1026
Cow position: chr17:17220864-17221630 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 303-669
Cow position: chr17:5546815-5546447 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 23

Conread position: 312-1026
Cow position: chr17:20545707-20546455 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 245

Conread position: 321-1016
Cow position: chr17:14029775-14029039 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 450

Conread position: 332-589
Cow position: chr17:14233002-14232747 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 0

Conread position: 332-607
Cow position: chr17:4297501-4297774 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 332-714
Cow position: chr17:16897504-16897115 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 30

Conread position: 332-749
Cow position: chr17:1705998-1706445 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 301
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 156, 0

Conread position: 332-885
Cow position: chr17:37839-38418 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 366
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 72, 245

Conread position: 332-900
Cow position: chr17:20090057-20089488 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 371
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 265, 37

Conread position: 332-1026
Cow position: chr17:20085213-20084493 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 35

Conread position: 332-1027
Cow position: chr17:20642314-20643028 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 56

Conread position: 332-1035
Cow position: chr17:22562746-22563471 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 28

Conread position: 332-1057
Cow position: chr17:20054755-20055466 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 104

Conread position: 336-615
Cow position: chr17:14005981-14006264 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 198

Conread position: 336-1026
Cow position: chr17:21770274-21770998 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 13

Conread position: 337-526
Cow position: chr17:11766690-11766883 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 149, 0

Conread position: 337-546
Cow position: chr17:760371-760581 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 193, 0

Conread position: 337-547
Cow position: chr17:43145973-43145767 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 121, 74

Conread position: 337-561
Cow position: chr17:19368506-19368736 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 337-590
Cow position: chr17:10322562-10322806 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 123, 88

Conread position: 337-601
Cow position: chr17:7561373-7561108 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 0

Conread position: 337-604
Cow position: chr17:3236750-3237014 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 106, 76

Conread position: 337-623
Cow position: chr17:4569847-4570129 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 130

Conread position: 337-623
Cow position: chr17:42383486-42383205 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 68, 183

Conread position: 337-627
Cow position: chr17:19789827-19790118 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 61, 150

Conread position: 337-642
Cow position: chr17:9096170-9096484 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 120

Conread position: 337-642
Cow position: chr17:13920870-13920565 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 296, 139

Conread position: 337-668
Cow position: chr17:17087992-17087665 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 292, 87

Conread position: 337-708
Cow position: chr17:10799342-10798971 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 295, 97

Conread position: 337-750
Cow position: chr17:36816269-36816685 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 67

Conread position: 337-900
Cow position: chr17:33935242-33934658 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 0

Conread position: 337-901
Cow position: chr17:24292232-24292817 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 175

Conread position: 337-914
Cow position: chr17:21067063-21066476 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 93

Conread position: 337-984
Cow position: chr17:4161856-4161200 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 402
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 295, 105

Conread position: 337-990
Cow position: chr17:10270750-10270077 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 158

Conread position: 337-990
Cow position: chr17:17382679-17383323 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 337-990
Cow position: chr17:23722196-23722900 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 452
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 240

Conread position: 337-990
Cow position: chr17:31311648-31310958 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 447
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 63, 56

Conread position: 337-1002
Cow position: chr17:2178469-2179136 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 173

Conread position: 337-1007
Cow position: chr17:9752393-9753084 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 337-1011
Cow position: chr17:2150792-2151464 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 116

Conread position: 337-1020
Cow position: chr17:33290360-33289661 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 53

Conread position: 337-1025
Cow position: chr17:19234392-19235087 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 31

Conread position: 337-1026
Cow position: chr17:19406695-19405996 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 16

Conread position: 337-1027
Cow position: chr17:13707350-13708024 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 55

Conread position: 337-1035
Cow position: chr17:2838626-2839345 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 115

Conread position: 337-1035
Cow position: chr17:4084667-4085390 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 118

Conread position: 337-1035
Cow position: chr17:4210525-4211256 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 24

Conread position: 337-1035
Cow position: chr17:6081107-6081817 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 85

Conread position: 337-1051
Cow position: chr17:15191544-15190825 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 147

Conread position: 338-560
Cow position: chr17:29358056-29358268 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 214, 13

Conread position: 338-642
Cow position: chr17:20511089-20510798 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 33, 23

Conread position: 338-824
Cow position: chr17:23510848-23510334 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 358
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 75, 44

Conread position: 338-990
Cow position: chr17:22233696-22233011 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 84

Conread position: 338-1026
Cow position: chr17:20092006-20091305 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 91

Conread position: 338-1040
Cow position: chr17:2078253-2078969 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 63

Conread position: 339-432
Cow position: chr17:16119628-16119535 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 339-487
Cow position: chr17:22504231-22504083 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 339-510
Cow position: chr17:3742766-3742937 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 339-510
Cow position: chr17:13725343-13725172 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 339-537
Cow position: chr17:20545563-20545762 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 339-547
Cow position: chr17:39950461-39950255 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 113, 95

Conread position: 339-563
Cow position: chr17:5307133-5306909 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 339-565
Cow position: chr17:11084813-11084588 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 339-588
Cow position: chr17:3709532-3709283 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 339-594
Cow position: chr17:43453520-43453264 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 339-616
Cow position: chr17:14214432-14214156 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 339-622
Cow position: chr17:28025475-28025190 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 339-642
Cow position: chr17:13689782-13689479 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 296, 38

Conread position: 339-644
Cow position: chr17:8211258-8211565 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 339-644
Cow position: chr17:17127573-17127899 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 70, 312

Conread position: 339-645
Cow position: chr17:12674849-12674542 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-669
Cow position: chr17:253425-253759 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 174

Conread position: 339-669
Cow position: chr17:26830308-26829976 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 238

Conread position: 339-707
Cow position: chr17:2582885-2583262 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 147

Conread position: 339-747
Cow position: chr17:18124334-18123912 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 202

Conread position: 339-770
Cow position: chr17:9073747-9074195 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 432

Conread position: 339-770
Cow position: chr17:15718940-15719388 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 432

Conread position: 339-770
Cow position: chr17:38828517-38828954 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 379

Conread position: 339-783
Cow position: chr17:14899320-14899781 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 364

Conread position: 339-799
Cow position: chr17:11785483-11785958 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 112

Conread position: 339-808
Cow position: chr17:22107040-22106545 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 339-820
Cow position: chr17:17069518-17070003 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 318
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 70, 97

Conread position: 339-854
Cow position: chr17:13930495-13931031 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 153

Conread position: 339-915
Cow position: chr17:1784949-1784343 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 99

Conread position: 339-985
Cow position: chr17:3550644-3549988 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 437
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 171

Conread position: 339-990
Cow position: chr17:5998902-5998242 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 305

Conread position: 339-990
Cow position: chr17:15140740-15140057 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 10

Conread position: 339-1009
Cow position: chr17:14871276-14871984 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 115

Conread position: 339-1010
Cow position: chr17:452438-453147 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 62

Conread position: 339-1010
Cow position: chr17:27792177-27791486 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 339-1020
Cow position: chr17:25738901-25739608 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 128

Conread position: 339-1023
Cow position: chr17:240891-241610 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 36

Conread position: 339-1023
Cow position: chr17:33791705-33792387 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 146

Conread position: 339-1024
Cow position: chr17:22249653-22248936 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 112

Conread position: 339-1026
Cow position: chr17:138210-138920 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-1026
Cow position: chr17:183745-184465 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 61

Conread position: 339-1026
Cow position: chr17:1882860-1883561 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 30

Conread position: 339-1026
Cow position: chr17:2245459-2244754 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 148

Conread position: 339-1026
Cow position: chr17:8222292-8223023 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 0

Conread position: 339-1026
Cow position: chr17:15709396-15708675 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-1026
Cow position: chr17:20390371-20391092 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-1026
Cow position: chr17:23321825-23321102 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 105

Conread position: 339-1026
Cow position: chr17:24027392-24026668 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 685

Conread position: 339-1035
Cow position: chr17:731887-731171 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 147

Conread position: 339-1035
Cow position: chr17:6071135-6071868 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 150

Conread position: 339-1035
Cow position: chr17:6262453-6263181 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 579

Conread position: 339-1035
Cow position: chr17:14242430-14243153 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 231

Conread position: 339-1035
Cow position: chr17:15374009-15374717 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 402

Conread position: 339-1035
Cow position: chr17:15438402-15439118 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 112

Conread position: 339-1035
Cow position: chr17:15808577-15809314 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 160

Conread position: 339-1035
Cow position: chr17:16870662-16869970 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 95

Conread position: 339-1035
Cow position: chr17:18100478-18099747 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-1035
Cow position: chr17:19215798-19215084 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 411

Conread position: 339-1035
Cow position: chr17:29825364-29824633 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 112

Conread position: 339-1035
Cow position: chr17:40810347-40811070 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 115

Conread position: 339-1035
Cow position: chr17:43991082-43991811 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 298

Conread position: 339-1036
Cow position: chr17:2264791-2265516 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 173

Conread position: 339-1037
Cow position: chr17:6122376-6123112 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 339-1037
Cow position: chr17:24784792-24785519 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 224

Conread position: 339-1041
Cow position: chr17:2176582-2177312 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 28

Conread position: 339-1041
Cow position: chr17:4062936-4063673 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 236

Conread position: 340-752
Cow position: chr17:3401269-3401697 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 46

Conread position: 340-1023
Cow position: chr17:1312158-1311448 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 45

Conread position: 340-1026
Cow position: chr17:15327879-15328599 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 0

Conread position: 340-1035
Cow position: chr17:15853327-15854062 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 83

Conread position: 340-1035
Cow position: chr17:29075726-29075048 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 71

Conread position: 341-528
Cow position: chr17:41412437-41412630 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 341-836
Cow position: chr17:20694799-20695325 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 341-1027
Cow position: chr17:27977721-27978422 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 23

Conread position: 344-624
Cow position: chr17:23040963-23041238 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 23

Conread position: 345-570
Cow position: chr17:11380522-11380293 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 91, 48

Conread position: 345-1035
Cow position: chr17:16855490-16854770 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 86

Conread position: 346-1027
Cow position: chr17:8204540-8205270 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 119

Conread position: 347-990
Cow position: chr17:1655142-1654481 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 68

Conread position: 347-1023
Cow position: chr17:17132956-17133647 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 77

Conread position: 348-1023
Cow position: chr17:29155992-29156688 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 81

Conread position: 348-1026
Cow position: chr17:1969758-1970469 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 126

Conread position: 348-1035
Cow position: chr17:20094555-20093833 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 469

Conread position: 349-1035
Cow position: chr17:29949825-29950539 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 199

Conread position: 350-820
Cow position: chr17:31093111-31092639 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 308
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 60, 74

Conread position: 350-837
Cow position: chr17:603302-602805 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 21

Conread position: 350-1035
Cow position: chr17:44481480-44482174 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 441
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 131, 61

Conread position: 351-950
Cow position: chr17:18591039-18591663 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 35

Conread position: 356-706
Cow position: chr17:41012147-41012505 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 157

Conread position: 356-1027
Cow position: chr17:12133381-12132691 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 82

Conread position: 356-1037
Cow position: chr17:14250487-14249776 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 28

Conread position: 360-818
Cow position: chr17:1712274-1711797 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 23

Conread position: 360-1023
Cow position: chr17:1709106-1708442 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 23

Conread position: 361-598
Cow position: chr17:18197495-18197732 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 201, 49

Conread position: 361-904
Cow position: chr17:2032829-2033374 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 24

Conread position: 363-630
Cow position: chr17:32408016-32407760 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 61

Conread position: 364-623
Cow position: chr17:24311466-24311718 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 364-1035
Cow position: chr17:1457758-1457053 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 91

Conread position: 365-1023
Cow position: chr17:1569575-1568905 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 87

Conread position: 366-1027
Cow position: chr17:10842898-10843589 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 131

Conread position: 385-523
Cow position: chr17:51540-51401 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 388-777
Cow position: chr17:3780110-3780509 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 177, 53

Conread position: 391-1035
Cow position: chr17:147570-148233 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 453

Conread position: 394-623
Cow position: chr17:3305033-3305258 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 39

Conread position: 403-1027
Cow position: chr17:20214764-20215402 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 79

Conread position: 405-642
Cow position: chr17:9745618-9745854 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 227, 183

Conread position: 406-783
Cow position: chr17:18722214-18721819 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 61

Conread position: 419-1026
Cow position: chr17:30182904-30182263 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 420-1023
Cow position: chr17:5043910-5043277 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 235

Conread position: 421-817
Cow position: chr17:10286177-10285766 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 5, 16

Conread position: 421-1026
Cow position: chr17:16118767-16118147 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 116

Conread position: 455-764
Cow position: chr17:13674797-13674466 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 177, 36

Conread position: 464-1026
Cow position: chr17:145449-144889 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 12

Conread position: 465-1036
Cow position: chr17:15117540-15118145 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 471-827
Cow position: chr17:14239798-14240178 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 472-595
Cow position: chr17:11579807-11579684 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 477-595
Cow position: chr17:16334512-16334394 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 477-758
Cow position: chr17:8994303-8994602 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 482-1023
Cow position: chr17:22774701-22774148 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 55

Conread position: 507-799
Cow position: chr17:38917263-38916954 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 296

Conread position: 512-915
Cow position: chr17:15229263-15228843 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 39

Conread position: 514-999
Cow position: chr17:21766669-21767185 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 388

Conread position: 516-1027
Cow position: chr17:15721379-15721911 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 363
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 65

Conread position: 518-854
Cow position: chr17:15325459-15325100 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 518-875
Cow position: chr17:44641694-44641313 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 518-912
Cow position: chr17:932177-932586 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 276
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 64, 118

Conread position: 521-990
Cow position: chr17:158063-158568 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 337
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 112, 57

Conread position: 527-1026
Cow position: chr17:11618987-11619513 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 345
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 106, 231

Conread position: 530-908
Cow position: chr17:11024689-11025094 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 273
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 103, 27

Conread position: 536-1026
Cow position: chr17:37529179-37528654 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 544-1020
Cow position: chr17:51268-50793 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 59

Conread position: 551-1035
Cow position: chr17:11084315-11083808 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 556-1026
Cow position: chr17:26829925-26829426 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 21

Conread position: 564-963
Cow position: chr17:29212454-29212887 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 285

Conread position: 568-1027
Cow position: chr17:20033265-20033728 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 271

Conread position: 570-914
Cow position: chr17:44865479-44865117 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 62, 128

Conread position: 570-1014
Cow position: chr17:43471760-43471285 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 13

Conread position: 570-1027
Cow position: chr17:20210055-20209556 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 332
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 65, 0

Conread position: 573-935
Cow position: chr17:30264-30647 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 264

Conread position: 573-1026
Cow position: chr17:34236420-34235933 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 584-859
Cow position: chr17:11381158-11381453 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 267

Conread position: 593-1027
Cow position: chr17:18241849-18242299 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 245

Conread position: 613-1023
Cow position: chr17:29079252-29079672 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 228

Conread position: 652-868
Cow position: chr17:16463998-16464229 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 21, 190

Conread position: 652-1023
Cow position: chr17:20078739-20078360 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 26

Conread position: 652-1026
Cow position: chr17:5806574-5806171 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 652-1026
Cow position: chr17:6611937-6612340 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 653-998
Cow position: chr17:15350965-15351328 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 168

Conread position: 661-1004
Cow position: chr17:13921177-13921527 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 227
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 257

Conread position: 661-1026
Cow position: chr17:16447547-16447164 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 172

Conread position: 661-1035
Cow position: chr17:18200669-18201048 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 113

Conread position: 661-1035
Cow position: chr17:31232610-31232997 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 84

Conread position: 663-1023
Cow position: chr17:17127940-17128319 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 671-1026
Cow position: chr17:13910670-13910299 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 244

Conread position: 672-837
Cow position: chr17:43231226-43231049 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 672-915
Cow position: chr17:5546343-5546087 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 672-915
Cow position: chr17:14865442-14865187 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 42, 0

Conread position: 672-915
Cow position: chr17:14932925-14932670 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1016
Cow position: chr17:11032093-11032457 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 195

Conread position: 672-1020
Cow position: chr17:21304234-21304601 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 15

Conread position: 672-1023
Cow position: chr17:8068287-8067930 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 76

Conread position: 672-1026
Cow position: chr17:5638947-5638570 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1026
Cow position: chr17:5672575-5672198 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1026
Cow position: chr17:17957546-17957915 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 70

Conread position: 672-1026
Cow position: chr17:18777888-18777514 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 346

Conread position: 672-1027
Cow position: chr17:18198296-18198673 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 250
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 44, 78

Conread position: 672-1035
Cow position: chr17:3305517-3305917 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 672-1035
Cow position: chr17:8212003-8212383 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 164

Conread position: 672-1035
Cow position: chr17:14006369-14006741 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 179

Conread position: 672-1035
Cow position: chr17:14213074-14212693 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 672-1036
Cow position: chr17:36266316-36265946 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 17

Conread position: 672-1043
Cow position: chr17:36790013-36790402 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 41, 177

Conread position: 673-860
Cow position: chr17:36160097-36159910 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 104, 48

Conread position: 675-1023
Cow position: chr17:2698498-2698868 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 41, 217

Conread position: 675-1026
Cow position: chr17:37415943-37415574 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 313

Conread position: 676-960
Cow position: chr17:28024950-28024650 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 181
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 104, 0

Conread position: 676-1026
Cow position: chr17:23338103-23337734 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 297

Conread position: 677-899
Cow position: chr17:15128333-15128567 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 677-1026
Cow position: chr17:20225549-20225920 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 679-1037
Cow position: chr17:16903534-16903908 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 175

Conread position: 683-990
Cow position: chr17:13990296-13989982 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 103

Conread position: 688-963
Cow position: chr17:14232746-14232449 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 688-1037
Cow position: chr17:4635817-4635454 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 287

Conread position: 713-895
Cow position: chr17:34000393-34000206 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 121

Conread position: 713-994
Cow position: chr17:16896876-16896575 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 713-1026
Cow position: chr17:254108-254411 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 200, 65

Conread position: 713-1026
Cow position: chr17:2583381-2583705 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 260

Conread position: 713-1026
Cow position: chr17:6955637-6955957 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 24

Conread position: 713-1035
Cow position: chr17:1672289-1672624 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 172

Conread position: 714-915
Cow position: chr17:11338159-11337968 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 716-848
Cow position: chr17:5174823-5174685 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 719-1035
Cow position: chr17:29471434-29471757 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 120

Conread position: 719-1041
Cow position: chr17:36816880-36817208 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 15, 119

Conread position: 734-1035
Cow position: chr17:21666014-21666326 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 46, 0

Conread position: 739-1027
Cow position: chr17:18123656-18123357 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 747-975
Cow position: chr17:4570236-4570479 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 752-1026
Cow position: chr17:29897671-29897953 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 58

Conread position: 753-1035
Cow position: chr17:8994307-8994013 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 113

Conread position: 772-1020
Cow position: chr17:3780711-3780962 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 141, 6

Conread position: 773-985
Cow position: chr17:45878688-45878910 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 31

Conread position: 778-953
Cow position: chr17:42247790-42247619 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 121, 49

Conread position: 778-999
Cow position: chr17:18324341-18324123 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 778-1026
Cow position: chr17:38991813-38992070 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 135, 83

Conread position: 778-1035
Cow position: chr17:13674422-13674165 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 171
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 154, 83

Conread position: 778-1035
Cow position: chr17:29041839-29041576 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 138, 46

Conread position: 780-1026
Cow position: chr17:2521378-2521122 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 131, 0

Conread position: 781-1026
Cow position: chr17:36284330-36284585 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 130, 0

Conread position: 781-1026
Cow position: chr17:39824131-39823876 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 131, 0

Conread position: 782-1026
Cow position: chr17:41893325-41893073 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 129, 58

Conread position: 782-1035
Cow position: chr17:11913685-11913422 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 129, 0

Conread position: 787-1035
Cow position: chr17:38828952-38829207 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 118, 27

Conread position: 789-1026
Cow position: chr17:21716533-21716780 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 122, 0

Conread position: 791-1014
Cow position: chr17:15558644-15558878 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 796-1035
Cow position: chr17:2201375-2201624 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 115, 0

Conread position: 803-1002
Cow position: chr17:22134282-22134489 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 84

Conread position: 805-1023
Cow position: chr17:36747434-36747214 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 97, 0

Conread position: 806-1035
Cow position: chr17:8449801-8450037 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 107, 77

Conread position: 814-1026
Cow position: chr17:16505651-16505429 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 815-1040
Cow position: chr17:15335342-15335108 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 96, 189

Conread position: 825-1004
Cow position: chr17:1877916-1877727 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 0

Conread position: 828-1035
Cow position: chr17:40801862-40802074 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 89, 178

Conread position: 833-1004
Cow position: chr17:18721499-18721330 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 841-1055
Cow position: chr17:12290364-12290138 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 845-1026
Cow position: chr17:25834544-25834735 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 845-1035
Cow position: chr17:42313011-42313211 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 856-1023
Cow position: chr17:16216573-16216744 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 864-1023
Cow position: chr17:13725410-13725579 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 870-1037
Cow position: chr17:18340324-18340150 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 872-1026
Cow position: chr17:980031-979867 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 923-1035
Cow position: chr17:922837-922949 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 76

Show alignments to all cow chromosomes.