Cow genome map

Conread name: Ss1.1-LyN1-MLN01C080083.5

Conread position: 271-642
Cow position: chr20:31076700-31076347 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 20

Conread position: 288-1026
Cow position: chr20:13654595-13653832 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 83

Conread position: 331-641
Cow position: chr20:32351331-32351646 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 127, 100

Conread position: 332-848
Cow position: chr20:33598182-33597642 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 332-859
Cow position: chr20:31748158-31748678 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 338
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 61

Conread position: 332-915
Cow position: chr20:3677571-3676989 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 71

Conread position: 337-487
Cow position: chr20:14749270-14749420 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 337-588
Cow position: chr20:8350494-8350252 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 75, 18

Conread position: 337-609
Cow position: chr20:22210637-22210905 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 96, 118

Conread position: 337-617
Cow position: chr20:32125805-32125530 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 98, 144

Conread position: 337-622
Cow position: chr20:19669667-19669390 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 75, 87

Conread position: 337-623
Cow position: chr20:20365155-20364876 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 7, 0

Conread position: 337-623
Cow position: chr20:23900155-23900434 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 82

Conread position: 337-626
Cow position: chr20:30326337-30326622 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 41, 9

Conread position: 337-642
Cow position: chr20:2653916-2654221 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 28

Conread position: 337-642
Cow position: chr20:10495772-10496077 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 28

Conread position: 337-708
Cow position: chr20:5225776-5225397 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 75, 37

Conread position: 337-716
Cow position: chr20:12693828-12694218 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 368

Conread position: 337-838
Cow position: chr20:35131797-35132320 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 159

Conread position: 337-857
Cow position: chr20:20352555-20352022 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 148

Conread position: 337-857
Cow position: chr20:28035067-28034534 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 111

Conread position: 337-897
Cow position: chr20:3509674-3510227 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 75

Conread position: 337-916
Cow position: chr20:16944306-16944881 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 78

Conread position: 337-917
Cow position: chr20:14721580-14720987 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 96

Conread position: 337-956
Cow position: chr20:37582847-37583448 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 50

Conread position: 337-990
Cow position: chr20:12685795-12685108 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 445
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 100

Conread position: 337-1020
Cow position: chr20:13816399-13817124 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 171

Conread position: 337-1026
Cow position: chr20:7513140-7512426 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 90

Conread position: 337-1026
Cow position: chr20:12568523-12567810 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 188

Conread position: 337-1027
Cow position: chr20:2017012-2016301 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 458
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 13, 9

Conread position: 337-1027
Cow position: chr20:32085671-32084929 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 188

Conread position: 337-1051
Cow position: chr20:14511497-14512231 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 174

Conread position: 338-822
Cow position: chr20:870223-869718 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 11

Conread position: 338-860
Cow position: chr20:13575929-13575383 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 154

Conread position: 338-1020
Cow position: chr20:14757469-14756752 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 299

Conread position: 338-1026
Cow position: chr20:12332476-12333185 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 174

Conread position: 339-453
Cow position: chr20:26801146-26801035 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 339-462
Cow position: chr20:24829091-24829213 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 339-488
Cow position: chr20:19244251-19244402 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 339-489
Cow position: chr20:19343331-19343479 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 339-504
Cow position: chr20:16159881-16159718 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 140, 0

Conread position: 339-622
Cow position: chr20:18356020-18356303 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 339-630
Cow position: chr20:10867007-10866718 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 339-639
Cow position: chr20:5270380-5270082 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 153

Conread position: 339-673
Cow position: chr20:22186344-22186006 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 94

Conread position: 339-673
Cow position: chr20:36375989-36375650 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 11, 6

Conread position: 339-714
Cow position: chr20:15093784-15093395 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 360

Conread position: 339-746
Cow position: chr20:23801692-23802105 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 328

Conread position: 339-746
Cow position: chr20:28163834-28164256 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 47

Conread position: 339-747
Cow position: chr20:20939244-20938829 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 92

Conread position: 339-764
Cow position: chr20:34459523-34459080 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-783
Cow position: chr20:35144114-35143651 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 95

Conread position: 339-783
Cow position: chr20:42085322-42085784 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-799
Cow position: chr20:35108398-35107921 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 464

Conread position: 339-823
Cow position: chr20:37169439-37168931 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 427

Conread position: 339-835
Cow position: chr20:24542215-24542735 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-848
Cow position: chr20:19306596-19306063 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-859
Cow position: chr20:21016218-21015683 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 89

Conread position: 339-866
Cow position: chr20:35127460-35128009 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 234

Conread position: 339-887
Cow position: chr20:31785583-31785020 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 17

Conread position: 339-905
Cow position: chr20:23805088-23804502 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 114

Conread position: 339-915
Cow position: chr20:7811045-7810453 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 114

Conread position: 339-915
Cow position: chr20:38956927-38957527 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-915
Cow position: chr20:39234020-39234620 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-916
Cow position: chr20:25845835-25845234 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 491

Conread position: 339-950
Cow position: chr20:6476307-6476941 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 127

Conread position: 339-964
Cow position: chr20:8971102-8970445 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 173

Conread position: 339-990
Cow position: chr20:3808980-3808299 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 237

Conread position: 339-990
Cow position: chr20:35019707-35020385 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 154

Conread position: 339-998
Cow position: chr20:34967780-34968465 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 52

Conread position: 339-1002
Cow position: chr20:13506769-13506076 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 294

Conread position: 339-1016
Cow position: chr20:20731053-20731758 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 114

Conread position: 339-1021
Cow position: chr20:13765682-13766396 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 315

Conread position: 339-1023
Cow position: chr20:8098577-8099283 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 193

Conread position: 339-1023
Cow position: chr20:28561095-28560387 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 503

Conread position: 339-1026
Cow position: chr20:7598068-7597352 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 672

Conread position: 339-1026
Cow position: chr20:9338815-9339523 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 71

Conread position: 339-1026
Cow position: chr20:14925853-14925132 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-1026
Cow position: chr20:15090586-15089862 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-1026
Cow position: chr20:16106235-16106958 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 339-1026
Cow position: chr20:16515148-16515833 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 39

Conread position: 339-1026
Cow position: chr20:16559752-16559022 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 0

Conread position: 339-1026
Cow position: chr20:18093110-18092392 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 136

Conread position: 339-1026
Cow position: chr20:20440162-20439459 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 89

Conread position: 339-1026
Cow position: chr20:22061388-22060667 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-1026
Cow position: chr20:27876271-27876993 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 146

Conread position: 339-1026
Cow position: chr20:30385457-30384735 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 112

Conread position: 339-1026
Cow position: chr20:30431060-30431789 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 417

Conread position: 339-1027
Cow position: chr20:15241221-15240529 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 41

Conread position: 339-1027
Cow position: chr20:28724546-28725269 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 137

Conread position: 339-1035
Cow position: chr20:825569-826299 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 112

Conread position: 339-1035
Cow position: chr20:6136200-6135472 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 448

Conread position: 339-1035
Cow position: chr20:10922132-10921407 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 415

Conread position: 339-1035
Cow position: chr20:12435606-12434881 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 292

Conread position: 339-1035
Cow position: chr20:15294827-15295536 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 113

Conread position: 339-1035
Cow position: chr20:17658443-17657713 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 0

Conread position: 339-1035
Cow position: chr20:19440704-19441438 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 209

Conread position: 339-1035
Cow position: chr20:21719356-21720071 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 61

Conread position: 339-1035
Cow position: chr20:22208406-22209140 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 362

Conread position: 339-1035
Cow position: chr20:23466860-23466131 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 82

Conread position: 339-1035
Cow position: chr20:24568480-24567753 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 339-1035
Cow position: chr20:28444559-28443830 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 512

Conread position: 339-1037
Cow position: chr20:35159791-35159070 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 186

Conread position: 339-1040
Cow position: chr20:19844574-19845299 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 74

Conread position: 339-1045
Cow position: chr20:24400087-24399336 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 340-669
Cow position: chr20:9587556-9587890 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 31

Conread position: 340-984
Cow position: chr20:14867593-14866924 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 455

Conread position: 341-754
Cow position: chr20:16189950-16189519 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 0

Conread position: 341-832
Cow position: chr20:5076779-5077292 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 42

Conread position: 341-1027
Cow position: chr20:10493994-10494701 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 106

Conread position: 341-1037
Cow position: chr20:12047301-12048000 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 114

Conread position: 344-997
Cow position: chr20:30397332-30396652 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 56

Conread position: 346-640
Cow position: chr20:31080171-31080466 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 106, 132

Conread position: 346-861
Cow position: chr20:42923354-42923887 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 10

Conread position: 346-1027
Cow position: chr20:13954428-13955135 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 97

Conread position: 347-1027
Cow position: chr20:25331345-25330655 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 96

Conread position: 347-1035
Cow position: chr20:7569167-7568454 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 91

Conread position: 347-1035
Cow position: chr20:7593655-7592940 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 91

Conread position: 348-621
Cow position: chr20:38747576-38747308 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 63

Conread position: 348-761
Cow position: chr20:13788908-13789339 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 292
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 179, 76

Conread position: 348-1027
Cow position: chr20:28294111-28294830 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 76

Conread position: 349-562
Cow position: chr20:24437501-24437712 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 199, 93

Conread position: 349-626
Cow position: chr20:22696255-22695979 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 46, 63

Conread position: 355-600
Cow position: chr20:13644983-13644740 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 57

Conread position: 356-642
Cow position: chr20:29313612-29313899 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 158

Conread position: 356-1026
Cow position: chr20:753244-753951 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 95

Conread position: 357-624
Cow position: chr20:20185547-20185813 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 219, 138

Conread position: 359-1035
Cow position: chr20:31847029-31846310 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 691

Conread position: 363-576
Cow position: chr20:29114406-29114193 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 363-1004
Cow position: chr20:5086524-5085849 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 0

Conread position: 365-642
Cow position: chr20:2681663-2681938 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 269, 130

Conread position: 368-783
Cow position: chr20:27345164-27344733 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 110

Conread position: 372-1035
Cow position: chr20:27994716-27994006 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 401

Conread position: 379-602
Cow position: chr20:29758096-29758319 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 379-744
Cow position: chr20:37270915-37271299 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 379-1014
Cow position: chr20:34642839-34643507 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 469

Conread position: 384-1037
Cow position: chr20:30688709-30689393 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 400

Conread position: 386-915
Cow position: chr20:14741033-14741575 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 61

Conread position: 393-592
Cow position: chr20:15745869-15746058 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 393-1035
Cow position: chr20:31220153-31220789 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 210

Conread position: 404-1020
Cow position: chr20:30776572-30777210 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 205

Conread position: 408-620
Cow position: chr20:7552532-7552322 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 28

Conread position: 410-1026
Cow position: chr20:33296085-33295441 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 413
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 222, 14

Conread position: 412-1035
Cow position: chr20:5538044-5538663 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 374

Conread position: 413-914
Cow position: chr20:15116678-15117188 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 20

Conread position: 417-1026
Cow position: chr20:6259433-6258790 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 454

Conread position: 418-754
Cow position: chr20:23393144-23392790 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 0

Conread position: 418-1020
Cow position: chr20:24904656-24904040 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 419-913
Cow position: chr20:33181617-33181111 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 151

Conread position: 424-712
Cow position: chr20:1743875-1744166 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 27

Conread position: 431-901
Cow position: chr20:6500813-6500298 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 84

Conread position: 432-1035
Cow position: chr20:25659136-25658505 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 22

Conread position: 436-1043
Cow position: chr20:18489833-18490476 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 72

Conread position: 438-622
Cow position: chr20:6018644-6018461 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 143, 0

Conread position: 440-767
Cow position: chr20:11719668-11720012 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 443-843
Cow position: chr20:19425088-19425509 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 12

Conread position: 443-1023
Cow position: chr20:5794667-5795282 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 457

Conread position: 454-1004
Cow position: chr20:19364974-19364399 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 455-751
Cow position: chr20:40007750-40007436 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 455-1026
Cow position: chr20:10035820-10035240 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 142

Conread position: 456-898
Cow position: chr20:15800053-15799588 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 18

Conread position: 458-607
Cow position: chr20:11656710-11656859 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 460-623
Cow position: chr20:17667167-17667328 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 462-872
Cow position: chr20:26800372-26799938 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 462-990
Cow position: chr20:25987681-25988223 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 18

Conread position: 462-1026
Cow position: chr20:13677806-13677232 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 383
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 170, 21

Conread position: 463-742
Cow position: chr20:10063061-10062769 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 161, 32

Conread position: 464-990
Cow position: chr20:30578777-30579337 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 467-1051
Cow position: chr20:6240214-6239601 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 29

Conread position: 471-1035
Cow position: chr20:21397742-21398336 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 61

Conread position: 482-1020
Cow position: chr20:10404634-10405198 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 261

Conread position: 485-982
Cow position: chr20:35093476-35094003 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 18

Conread position: 486-1026
Cow position: chr20:651843-651300 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 330
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 145, 264

Conread position: 497-779
Cow position: chr20:14876224-14876529 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 497-1023
Cow position: chr20:3782757-3782196 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 65

Conread position: 499-912
Cow position: chr20:28482789-28483219 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 283
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 14

Conread position: 500-1023
Cow position: chr20:8445361-8445919 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 502-1026
Cow position: chr20:31504282-31504843 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 509-990
Cow position: chr20:9996491-9997010 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 510-1026
Cow position: chr20:30146395-30146941 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 518-1026
Cow position: chr20:34231888-34231360 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 285

Conread position: 520-930
Cow position: chr20:20982724-20983151 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 288
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 63, 10

Conread position: 520-1000
Cow position: chr20:9410334-9410848 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 381

Conread position: 522-915
Cow position: chr20:30737259-30737663 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 92

Conread position: 522-964
Cow position: chr20:20092271-20092748 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 523-1027
Cow position: chr20:24508085-24507569 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 340
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 102, 41

Conread position: 534-910
Cow position: chr20:28247266-28246868 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 382

Conread position: 537-1026
Cow position: chr20:22048353-22048876 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 538-1023
Cow position: chr20:13325099-13325601 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 5

Conread position: 545-1026
Cow position: chr20:5503752-5503237 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 545-1035
Cow position: chr20:15067812-15068337 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 63

Conread position: 548-964
Cow position: chr20:10790454-10790901 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 326

Conread position: 549-983
Cow position: chr20:28887375-28887841 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 551-974
Cow position: chr20:39284184-39284618 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 295
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 22

Conread position: 553-975
Cow position: chr20:14672343-14672794 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 14

Conread position: 554-1026
Cow position: chr20:19018402-19017902 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 302

Conread position: 557-905
Cow position: chr20:12997260-12996885 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 307

Conread position: 557-1026
Cow position: chr20:18608297-18608784 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 325
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 67, 21

Conread position: 563-1027
Cow position: chr20:774671-775169 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 564-1026
Cow position: chr20:28956937-28956441 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 480

Conread position: 569-958
Cow position: chr20:13025305-13024890 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 278
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 16

Conread position: 570-1026
Cow position: chr20:32351622-32352105 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 320
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 63, 188

Conread position: 573-834
Cow position: chr20:14745646-14745920 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 98, 43

Conread position: 573-989
Cow position: chr20:10685762-10686202 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 185

Conread position: 573-1027
Cow position: chr20:8350074-8349597 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 302
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 67

Conread position: 573-1050
Cow position: chr20:13050549-13050023 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 303

Conread position: 574-1035
Cow position: chr20:15526769-15527264 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 582-1035
Cow position: chr20:6550966-6550479 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 583-1035
Cow position: chr20:32165066-32164587 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 594-1035
Cow position: chr20:30479153-30479628 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 603-1037
Cow position: chr20:29371365-29370900 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 612-1038
Cow position: chr20:8890380-8890828 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 24, 160

Conread position: 643-1037
Cow position: chr20:9007698-9007314 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 28, 64

Conread position: 652-834
Cow position: chr20:31157707-31157908 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 652-1026
Cow position: chr20:4204773-4205159 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 63, 23

Conread position: 652-1026
Cow position: chr20:37154860-37154456 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 653-985
Cow position: chr20:13661237-13660876 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 657-1014
Cow position: chr20:5269916-5269536 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 84

Conread position: 661-1040
Cow position: chr20:14211255-14210855 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 164

Conread position: 665-920
Cow position: chr20:8786419-8786686 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 666-1051
Cow position: chr20:9708002-9707602 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 152

Conread position: 667-842
Cow position: chr20:35037097-35037285 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 7

Conread position: 668-990
Cow position: chr20:2682363-2682687 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 48, 88

Conread position: 668-1023
Cow position: chr20:27896308-27895943 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 85, 22

Conread position: 672-993
Cow position: chr20:6054221-6053875 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 46, 165

Conread position: 672-1013
Cow position: chr20:19156023-19155666 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 243
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 44, 188

Conread position: 672-1016
Cow position: chr20:38000624-38000978 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 170

Conread position: 672-1020
Cow position: chr20:29806806-29806430 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 265
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 41, 102

Conread position: 672-1023
Cow position: chr20:22222470-22222097 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 672-1023
Cow position: chr20:26053219-26052846 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1026
Cow position: chr20:9222986-9223362 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1026
Cow position: chr20:13304164-13303788 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1035
Cow position: chr20:9536039-9536413 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 77

Conread position: 672-1035
Cow position: chr20:11516905-11516518 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 320

Conread position: 672-1035
Cow position: chr20:12177356-12176971 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 672-1035
Cow position: chr20:22185878-22185495 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 672-1038
Cow position: chr20:35844298-35843914 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 53, 28

Conread position: 672-1047
Cow position: chr20:26737911-26738309 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 673-915
Cow position: chr20:32639145-32639400 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 674-1038
Cow position: chr20:15781049-15780675 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 106, 46

Conread position: 677-989
Cow position: chr20:41111281-41110948 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 76

Conread position: 677-1027
Cow position: chr20:20364603-20364234 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 139

Conread position: 683-1035
Cow position: chr20:9588921-9589297 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 144

Conread position: 710-1023
Cow position: chr20:40255842-40256169 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 37

Conread position: 713-933
Cow position: chr20:28282250-28282473 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 98

Conread position: 713-1026
Cow position: chr20:11331493-11331164 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 714-900
Cow position: chr20:30816651-30816459 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 714-977
Cow position: chr20:10496716-10496987 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 93

Conread position: 714-1020
Cow position: chr20:12156173-12155868 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 66, 26

Conread position: 714-1037
Cow position: chr20:28113172-28113503 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 65, 98

Conread position: 715-1026
Cow position: chr20:35112215-35112539 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 25

Conread position: 715-1027
Cow position: chr20:36375014-36374688 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 209
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 720-990
Cow position: chr20:24660289-24660563 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 154
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 187, 58

Conread position: 723-1038
Cow position: chr20:6097473-6097148 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 107

Conread position: 725-1027
Cow position: chr20:19352877-19352566 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 256

Conread position: 727-1020
Cow position: chr20:7995348-7995039 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 730-1035
Cow position: chr20:3468579-3468896 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 130

Conread position: 730-1035
Cow position: chr20:26999692-27000014 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 96

Conread position: 739-1020
Cow position: chr20:20935923-20935633 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 68

Conread position: 739-1026
Cow position: chr20:37271478-37271780 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 99

Conread position: 739-1053
Cow position: chr20:33247098-33246779 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 41, 239

Conread position: 740-1035
Cow position: chr20:5958937-5958626 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 743-1026
Cow position: chr20:23802361-23802660 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 0

Conread position: 743-1035
Cow position: chr20:34598144-34597842 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 37, 150

Conread position: 752-1029
Cow position: chr20:12827248-12826963 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 16

Conread position: 771-915
Cow position: chr20:14585317-14585460 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 775-1037
Cow position: chr20:17667990-17668266 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 136, 80

Conread position: 776-1035
Cow position: chr20:34459023-34458751 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 778-999
Cow position: chr20:15234884-15235098 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 35

Conread position: 778-1023
Cow position: chr20:14877312-14877565 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 133, 180

Conread position: 778-1026
Cow position: chr20:6055472-6055221 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 778-1026
Cow position: chr20:28165100-28165352 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 127, 85

Conread position: 778-1040
Cow position: chr20:33731008-33731277 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 134, 38

Conread position: 778-1042
Cow position: chr20:26075809-26076081 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 133, 186

Conread position: 780-1023
Cow position: chr20:14327360-14327109 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 133, 41

Conread position: 782-1035
Cow position: chr20:42254777-42254526 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 32

Conread position: 786-1026
Cow position: chr20:25856435-25856678 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 117, 57

Conread position: 789-1027
Cow position: chr20:5575553-5575782 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 792-1023
Cow position: chr20:18322291-18322057 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 156

Conread position: 796-1023
Cow position: chr20:35145075-35145306 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 16

Conread position: 797-1014
Cow position: chr20:7081545-7081318 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 115, 0

Conread position: 797-1020
Cow position: chr20:12694575-12694807 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 9, 34

Conread position: 807-1023
Cow position: chr20:12489864-12489642 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 107, 149

Conread position: 813-1026
Cow position: chr20:29285321-29285098 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 822-1026
Cow position: chr20:11454307-11454093 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 825-1035
Cow position: chr20:19145931-19146147 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 88, 145

Conread position: 826-998
Cow position: chr20:14836487-14836669 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 830-1037
Cow position: chr20:16526601-16526818 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 152

Conread position: 836-1023
Cow position: chr20:9700633-9700828 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 77, 32

Conread position: 837-1038
Cow position: chr20:11720001-11720206 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 40

Conread position: 839-1035
Cow position: chr20:35037067-35036861 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 73, 143

Conread position: 844-1026
Cow position: chr20:30546665-30546857 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 857-1026
Cow position: chr20:10099454-10099633 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 864-1026
Cow position: chr20:18549649-18549821 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 875-1035
Cow position: chr20:40423979-40423810 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 878-1026
Cow position: chr20:11635641-11635493 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 878-1026
Cow position: chr20:13619426-13619278 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1023
Cow position: chr20:17845087-17845223 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 891-1023
Cow position: chr20:1761170-1761302 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 899-1047
Cow position: chr20:35973274-35973129 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 130, 0

Conread position: 911-1026
Cow position: chr20:40781133-40781248 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 912-1026
Cow position: chr20:9432767-9432881 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.