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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01C080083.5
        

               
Conread position:
               
84-915
               

               
Cow position:
               
chr6:28400314-28399478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
695, 772
               

               
Conread position:
               
232-1007
               

               
Cow position:
               
chr6:27474999-27475801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
232-1035
               

               
Cow position:
               
chr6:25791113-25790292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
837
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
268-552
               

               
Cow position:
               
chr6:705492-705775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
278-547
               

               
Cow position:
               
chr6:65895426-65895158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
309-1026
               

               
Cow position:
               
chr6:45902307-45901576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
319-832
               

               
Cow position:
               
chr6:1888761-1888236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
331-1026
               

               
Cow position:
               
chr6:34074548-34075288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr6:23000830-23001021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
332-614
               

               
Cow position:
               
chr6:39435233-39434945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
332-652
               

               
Cow position:
               
chr6:28702021-28701693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 213
               

               
Conread position:
               
332-720
               

               
Cow position:
               
chr6:57472642-57473027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 100
               

               
Conread position:
               
332-732
               

               
Cow position:
               
chr6:41389764-41389350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 307
               

               
Conread position:
               
332-778
               

               
Cow position:
               
chr6:52696326-52696783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 201
               

               
Conread position:
               
332-800
               

               
Cow position:
               
chr6:7191859-7191394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
301, 163
               

               
Conread position:
               
332-990
               

               
Cow position:
               
chr6:24584677-24584018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 154
               

               
Conread position:
               
332-1020
               

               
Cow position:
               
chr6:9738570-9737848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 657
               

               
Conread position:
               
332-1023
               

               
Cow position:
               
chr6:6120291-6119580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 280
               

               
Conread position:
               
332-1023
               

               
Cow position:
               
chr6:15924901-15924182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 253
               

               
Conread position:
               
332-1026
               

               
Cow position:
               
chr6:12514206-12514905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 88
               

               
Conread position:
               
332-1026
               

               
Cow position:
               
chr6:15138478-15137757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 264
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chr6:12351517-12352261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 104
               

               
Conread position:
               
336-866
               

               
Cow position:
               
chr6:48875639-48875094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 280
               

               
Conread position:
               
336-975
               

               
Cow position:
               
chr6:68029869-68030544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
336-1026
               

               
Cow position:
               
chr6:40864341-40863616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 530
               

               
Conread position:
               
336-1026
               

               
Cow position:
               
chr6:43798219-43797482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
337-490
               

               
Cow position:
               
chr6:7176630-7176478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
337-503
               

               
Cow position:
               
chr6:30318072-30317907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
337-525
               

               
Cow position:
               
chr6:22806664-22806478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
337-554
               

               
Cow position:
               
chr6:18497012-18497229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
337-554
               

               
Cow position:
               
chr6:18963910-18963693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
337-563
               

               
Cow position:
               
chr6:41264733-41264962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
337-568
               

               
Cow position:
               
chr6:52194276-52194046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 140
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chr6:1053737-1053504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
337-587
               

               
Cow position:
               
chr6:67212085-67211838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
337-597
               

               
Cow position:
               
chr6:22667631-22667379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
337-609
               

               
Cow position:
               
chr6:64425188-64425461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
337-622
               

               
Cow position:
               
chr6:17353619-17353338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chr6:10634774-10635060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
241, 99
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chr6:63771712-63771436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
337-626
               

               
Cow position:
               
chr6:28518223-28517942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
337-627
               

               
Cow position:
               
chr6:24624703-24624410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 0
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr6:35824541-35824841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr6:67098001-67098312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chr6:67266962-67267265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 122
               

               
Conread position:
               
337-662
               

               
Cow position:
               
chr6:10694156-10694472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
254, 42
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr6:44096525-44096856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 225
               

               
Conread position:
               
337-708
               

               
Cow position:
               
chr6:15031163-15030777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
337-714
               

               
Cow position:
               
chr6:66277126-66277523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 156
               

               
Conread position:
               
337-758
               

               
Cow position:
               
chr6:39359500-39359067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
337-783
               

               
Cow position:
               
chr6:6159351-6159813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
337-794
               

               
Cow position:
               
chr6:63704956-63704471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
337-820
               

               
Cow position:
               
chr6:58952428-58951924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 0
               

               
Conread position:
               
337-856
               

               
Cow position:
               
chr6:3015559-3016078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 114
               

               
Conread position:
               
337-906
               

               
Cow position:
               
chr6:28550384-28549768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 326
               

               
Conread position:
               
337-915
               

               
Cow position:
               
chr6:365589-366185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 11
               

               
Conread position:
               
337-973
               

               
Cow position:
               
chr6:43330719-43330060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
337-975
               

               
Cow position:
               
chr6:32488230-32487575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 80
               

               
Conread position:
               
337-983
               

               
Cow position:
               
chr6:11354470-11353800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 243
               

               
Conread position:
               
337-984
               

               
Cow position:
               
chr6:39956758-39957440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
337-985
               

               
Cow position:
               
chr6:65867480-65868159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 242
               

               
Conread position:
               
337-988
               

               
Cow position:
               
chr6:63405490-63406180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 256
               

               
Conread position:
               
337-989
               

               
Cow position:
               
chr6:19329250-19328606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chr6:12646930-12647578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chr6:16595696-16596348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chr6:37385846-37386525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
337-1000
               

               
Cow position:
               
chr6:2367539-2366877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
337-1013
               

               
Cow position:
               
chr6:53935945-53935236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 512
               

               
Conread position:
               
337-1014
               

               
Cow position:
               
chr6:19104216-19103504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
337-1016
               

               
Cow position:
               
chr6:3893949-3893232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
337-1018
               

               
Cow position:
               
chr6:10235899-10236599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 36
               

               
Conread position:
               
337-1020
               

               
Cow position:
               
chr6:9840438-9839726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 142
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chr6:15480289-15480973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 106
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr6:6720675-6721388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 232
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr6:27341295-27342011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 110
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chr6:35724093-35724800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr6:15963196-15962508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
12, 149
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chr6:60167857-60167146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 88
               

               
Conread position:
               
337-1028
               

               
Cow position:
               
chr6:31010131-31009407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 411
               

               
Conread position:
               
337-1040
               

               
Cow position:
               
chr6:41676631-41677357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 91
               

               
Conread position:
               
337-1045
               

               
Cow position:
               
chr6:3927839-3928568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 624
               

               
Conread position:
               
337-1051
               

               
Cow position:
               
chr6:40158812-40158101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
338-783
               

               
Cow position:
               
chr6:9756922-9756491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
338-858
               

               
Cow position:
               
chr6:2581112-2581639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 101
               

               
Conread position:
               
338-1026
               

               
Cow position:
               
chr6:10651091-10650378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 79
               

               
Conread position:
               
338-1027
               

               
Cow position:
               
chr6:47849220-47848511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
339-440
               

               
Cow position:
               
chr6:40551418-40551317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-487
               

               
Cow position:
               
chr6:3573465-3573613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
137, 128
               

               
Conread position:
               
339-490
               

               
Cow position:
               
chr6:28186138-28185987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-495
               

               
Cow position:
               
chr6:13979458-13979614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-503
               

               
Cow position:
               
chr6:13367774-13367938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-518
               

               
Cow position:
               
chr6:58390643-58390465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
339-521
               

               
Cow position:
               
chr6:31813302-31813120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-539
               

               
Cow position:
               
chr6:46296968-46297168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-540
               

               
Cow position:
               
chr6:66562222-66562423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-549
               

               
Cow position:
               
chr6:28135629-28135839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-550
               

               
Cow position:
               
chr6:40318286-40318496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
339-555
               

               
Cow position:
               
chr6:18912779-18912563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
339-564
               

               
Cow position:
               
chr6:27527291-27527067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
339-564
               

               
Cow position:
               
chr6:50112783-50112994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
339-575
               

               
Cow position:
               
chr6:33810486-33810722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-576
               

               
Cow position:
               
chr6:65905599-65905365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
339-591
               

               
Cow position:
               
chr6:28400556-28400304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-598
               

               
Cow position:
               
chr6:1795972-1795714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
339-605
               

               
Cow position:
               
chr6:3485703-3485437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-609
               

               
Cow position:
               
chr6:1106154-1105880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 107
               

               
Conread position:
               
339-610
               

               
Cow position:
               
chr6:13849769-13850038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr6:34018108-34018400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-639
               

               
Cow position:
               
chr6:21711256-21711557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-640
               

               
Cow position:
               
chr6:18986711-18987016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chr6:2377399-2377705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chr6:14133048-14132742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-673
               

               
Cow position:
               
chr6:12971222-12970888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 316
               

               
Conread position:
               
339-673
               

               
Cow position:
               
chr6:35967771-35967432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-707
               

               
Cow position:
               
chr6:14264531-14264911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 165
               

               
Conread position:
               
339-712
               

               
Cow position:
               
chr6:61179519-61179153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
290, 79
               

               
Conread position:
               
339-733
               

               
Cow position:
               
chr6:8756122-8755710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-746
               

               
Cow position:
               
chr6:14065143-14065564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 86
               

               
Conread position:
               
339-747
               

               
Cow position:
               
chr6:43778214-43778639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 416
               

               
Conread position:
               
339-751
               

               
Cow position:
               
chr6:4467301-4467741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
339-758
               

               
Cow position:
               
chr6:22679550-22679987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-762
               

               
Cow position:
               
chr6:3685648-3686086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 95
               

               
Conread position:
               
339-764
               

               
Cow position:
               
chr6:45591243-45591686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
339-779
               

               
Cow position:
               
chr6:27761400-27761855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
339-783
               

               
Cow position:
               
chr6:1819102-1818643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 51
               

               
Conread position:
               
339-783
               

               
Cow position:
               
chr6:62577487-62577025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-798
               

               
Cow position:
               
chr6:25409281-25408823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 114
               

               
Conread position:
               
339-812
               

               
Cow position:
               
chr6:50720793-50721288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 100
               

               
Conread position:
               
339-820
               

               
Cow position:
               
chr6:34129152-34129657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 258
               

               
Conread position:
               
339-822
               

               
Cow position:
               
chr6:10267397-10266889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-847
               

               
Cow position:
               
chr6:17595590-17595058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-854
               

               
Cow position:
               
chr6:8536598-8536061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 63
               

               
Conread position:
               
339-868
               

               
Cow position:
               
chr6:48877-48324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 135
               

               
Conread position:
               
339-874
               

               
Cow position:
               
chr6:43790883-43790323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 543
               

               
Conread position:
               
339-900
               

               
Cow position:
               
chr6:21975648-21976219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 207
               

               
Conread position:
               
339-906
               

               
Cow position:
               
chr6:28488870-28488292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 99
               

               
Conread position:
               
339-909
               

               
Cow position:
               
chr6:38873964-38873372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 210
               

               
Conread position:
               
339-910
               

               
Cow position:
               
chr6:916738-917333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-911
               

               
Cow position:
               
chr6:41408101-41408695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 153
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr6:20351394-20350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chr6:33490359-33489759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
339-918
               

               
Cow position:
               
chr6:12628597-12629194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 157
               

               
Conread position:
               
339-960
               

               
Cow position:
               
chr6:25358186-25357517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 78
               

               
Conread position:
               
339-964
               

               
Cow position:
               
chr6:1507815-1507156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-964
               

               
Cow position:
               
chr6:41192016-41192679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 484
               

               
Conread position:
               
339-964
               

               
Cow position:
               
chr6:66189105-66188446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-976
               

               
Cow position:
               
chr6:27151745-27151075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 198
               

               
Conread position:
               
339-989
               

               
Cow position:
               
chr6:10043910-10044594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-997
               

               
Cow position:
               
chr6:12663620-12662928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-999
               

               
Cow position:
               
chr6:30270208-30269513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 693
               

               
Conread position:
               
339-999
               

               
Cow position:
               
chr6:51867690-51868376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 503
               

               
Conread position:
               
339-1010
               

               
Cow position:
               
chr6:42266431-42267125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 374
               

               
Conread position:
               
339-1012
               

               
Cow position:
               
chr6:40277754-40278454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 660
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chr6:4904279-4903597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 79
               

               
Conread position:
               
339-1016
               

               
Cow position:
               
chr6:28171598-28172309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 523
               

               
Conread position:
               
339-1020
               

               
Cow position:
               
chr6:41231184-41231897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 32
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:9734267-9733578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:26668329-26667612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 102
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:26772426-26771709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 576
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:28185635-28184907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 712
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:43186799-43187522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:44147253-44146536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 146
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:51732777-51733494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 472
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chr6:55238390-55239103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 446
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:127437-126719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:182848-182137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 497
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:2876336-2875618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 464
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:3151914-3152631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 74
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:3272785-3272066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 494
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:3886811-3886089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:7138645-7137926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 544
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:11019352-11020074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:11722500-11721792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 230
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:19713536-19712829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 17
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:25375396-25374692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:26325504-26324784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 505
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:31913480-31912759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:33465657-33466373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 154
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:36230831-36230110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:37387275-37387982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 186
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:40974881-40975584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 502
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:45936992-45937695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 415
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:45975204-45975915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:51149637-51150358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:55539574-55538855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 129
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:56452400-56451679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:59595944-59596661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 253
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:59618761-59619493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:60378858-60379579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:60875994-60876712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:62664470-62665191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chr6:65819887-65819166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 155
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chr6:8204875-8205604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 108
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chr6:28001685-28000979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 345
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chr6:43087897-43087187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 503
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:328664-327938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 95
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:478246-478975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 182
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:1536405-1537130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:5947080-5946350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:7467956-7467226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:11870236-11869511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 196
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:13308690-13307973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 312
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:14928154-14928876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:16050595-16049868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 490
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:16592663-16593373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 147
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:16704037-16703320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 259
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:16767141-16766417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 173
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:20450663-20451384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 189
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:24241986-24242712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 373
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:28160113-28160834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 112
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:34493372-34494100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 142
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:34504827-34504096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:34844017-34843288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 114
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:35874017-35873307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 191
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:36530979-36531699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 150
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:39331835-39331108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:39912020-39912747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 498
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:39999761-39999034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 143
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:43620426-43621156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 112
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:50570897-50571616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 91
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:51717241-51717982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 261
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chr6:64719016-64719741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 147
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chr6:17049066-17049800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 234
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chr6:17121083-17121816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 265
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chr6:28064686-28065417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 576
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chr6:44018133-44017401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 211
               

               
Conread position:
               
339-1047
               

               
Cow position:
               
chr6:50636985-50637704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 223
               

               
Conread position:
               
340-714
               

               
Cow position:
               
chr6:1275292-1274908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 147
               

               
Conread position:
               
340-759
               

               
Cow position:
               
chr6:6474742-6474314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 171
               

               
Conread position:
               
340-906
               

               
Cow position:
               
chr6:65929942-65930544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 77
               

               
Conread position:
               
340-1027
               

               
Cow position:
               
chr6:38989116-38988408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
341-1040
               

               
Cow position:
               
chr6:28103167-28102444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 59
               

               
Conread position:
               
341-1043
               

               
Cow position:
               
chr6:10611521-10612264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 236
               

               
Conread position:
               
342-564
               

               
Cow position:
               
chr6:40759148-40759365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
342-618
               

               
Cow position:
               
chr6:51895388-51895112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
343-990
               

               
Cow position:
               
chr6:50486075-50485404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 399
               

               
Conread position:
               
347-491
               

               
Cow position:
               
chr6:44493726-44493871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
347-570
               

               
Cow position:
               
chr6:47573485-47573709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
347-601
               

               
Cow position:
               
chr6:49645435-49645683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
347-747
               

               
Cow position:
               
chr6:55385972-55386379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 99
               

               
Conread position:
               
347-1035
               

               
Cow position:
               
chr6:53462449-53461754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 99
               

               
Conread position:
               
350-725
               

               
Cow position:
               
chr6:51876532-51876915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 86
               

               
Conread position:
               
352-1020
               

               
Cow position:
               
chr6:44950753-44950048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
355-806
               

               
Cow position:
               
chr6:11829915-11829446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 88
               

               
Conread position:
               
356-618
               

               
Cow position:
               
chr6:225201-224939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
356-990
               

               
Cow position:
               
chr6:15784260-15783612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
356-1003
               

               
Cow position:
               
chr6:35417229-35416580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 61
               

               
Conread position:
               
356-1023
               

               
Cow position:
               
chr6:39847627-39848328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 197
               

               
Conread position:
               
356-1026
               

               
Cow position:
               
chr6:21832944-21832244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 55
               

               
Conread position:
               
356-1026
               

               
Cow position:
               
chr6:27172543-27173257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 8
               

               
Conread position:
               
356-1040
               

               
Cow position:
               
chr6:16418968-16418252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
358-1026
               

               
Cow position:
               
chr6:53810331-53810995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 59
               

               
Conread position:
               
364-764
               

               
Cow position:
               
chr6:7759514-7759115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
259, 51
               

               
Conread position:
               
367-714
               

               
Cow position:
               
chr6:237142-236794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
265, 75
               

               
Conread position:
               
369-1027
               

               
Cow position:
               
chr6:20553516-20552826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 539
               

               
Conread position:
               
373-990
               

               
Cow position:
               
chr6:52190249-52189609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
375-531
               

               
Cow position:
               
chr6:54643316-54643473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
376-1035
               

               
Cow position:
               
chr6:47040477-47039786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 498
               

               
Conread position:
               
378-641
               

               
Cow position:
               
chr6:6205209-6205467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
379-990
               

               
Cow position:
               
chr6:6165382-6166000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
241, 116
               

               
Conread position:
               
380-963
               

               
Cow position:
               
chr6:11168242-11168859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
381-910
               

               
Cow position:
               
chr6:14498209-14497675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
381-916
               

               
Cow position:
               
chr6:2543469-2544024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 111
               

               
Conread position:
               
381-1026
               

               
Cow position:
               
chr6:22737970-22737290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 0
               

               
Conread position:
               
381-1035
               

               
Cow position:
               
chr6:11289718-11289042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 30
               

               
Conread position:
               
382-643
               

               
Cow position:
               
chr6:13404777-13405032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
246, 21
               

               
Conread position:
               
382-1035
               

               
Cow position:
               
chr6:33950411-33949735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 104
               

               
Conread position:
               
385-623
               

               
Cow position:
               
chr6:14760008-14759773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
385-901
               

               
Cow position:
               
chr6:47380419-47380949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 181
               

               
Conread position:
               
386-642
               

               
Cow position:
               
chr6:59504201-59504448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
388-846
               

               
Cow position:
               
chr6:14840570-14841057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
388-1036
               

               
Cow position:
               
chr6:65049916-65049260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
390-938
               

               
Cow position:
               
chr6:28475805-28476389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
390-1023
               

               
Cow position:
               
chr6:52249751-52249102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
393-605
               

               
Cow position:
               
chr6:30480641-30480856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
400-758
               

               
Cow position:
               
chr6:25217713-25218085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 147
               

               
Conread position:
               
400-800
               

               
Cow position:
               
chr6:1380698-1380279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
244, 95
               

               
Conread position:
               
403-640
               

               
Cow position:
               
chr6:45643763-45643997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
403-1020
               

               
Cow position:
               
chr6:55474065-55474716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
405-621
               

               
Cow position:
               
chr6:66838891-66839107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
169, 71
               

               
Conread position:
               
405-708
               

               
Cow position:
               
chr6:66548239-66548545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
228, 90
               

               
Conread position:
               
406-915
               

               
Cow position:
               
chr6:45724383-45723852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 468
               

               
Conread position:
               
408-621
               

               
Cow position:
               
chr6:49814947-49815168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
410-707
               

               
Cow position:
               
chr6:10680644-10680952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
411-990
               

               
Cow position:
               
chr6:3119776-3119159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
411-1037
               

               
Cow position:
               
chr6:15276473-15275813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
413-1026
               

               
Cow position:
               
chr6:888326-888973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
415-1027
               

               
Cow position:
               
chr6:62487699-62487069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
419-849
               

               
Cow position:
               
chr6:38932479-38932025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 0
               

               
Conread position:
               
421-739
               

               
Cow position:
               
chr6:9586842-9587170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 297
               

               
Conread position:
               
421-1014
               

               
Cow position:
               
chr6:14851969-14851346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 163
               

               
Conread position:
               
423-1014
               

               
Cow position:
               
chr6:46947599-46948220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
426-1023
               

               
Cow position:
               
chr6:65875499-65874871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 82
               

               
Conread position:
               
427-915
               

               
Cow position:
               
chr6:42615884-42616390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 17
               

               
Conread position:
               
427-1013
               

               
Cow position:
               
chr6:50121145-50120527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 422
               

               
Conread position:
               
428-622
               

               
Cow position:
               
chr6:23880568-23880376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
428-628
               

               
Cow position:
               
chr6:68871123-68871324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
428-783
               

               
Cow position:
               
chr6:49165815-49165445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 67
               

               
Conread position:
               
428-854
               

               
Cow position:
               
chr6:49826468-49826018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
429-1026
               

               
Cow position:
               
chr6:6556744-6557377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
430-748
               

               
Cow position:
               
chr6:55902008-55902345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
436-1014
               

               
Cow position:
               
chr6:58030572-58031181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 217
               

               
Conread position:
               
438-900
               

               
Cow position:
               
chr6:35883366-35883843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 118
               

               
Conread position:
               
440-669
               

               
Cow position:
               
chr6:38672031-38672258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
440-912
               

               
Cow position:
               
chr6:1096938-1096439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 410
               

               
Conread position:
               
443-974
               

               
Cow position:
               
chr6:52899750-52900310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 123
               

               
Conread position:
               
443-999
               

               
Cow position:
               
chr6:1402729-1402170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
443-999
               

               
Cow position:
               
chr6:1407317-1406758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
443-1026
               

               
Cow position:
               
chr6:11193792-11193166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 352
               

               
Conread position:
               
443-1026
               

               
Cow position:
               
chr6:40550899-40550284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 130
               

               
Conread position:
               
443-1027
               

               
Cow position:
               
chr6:52240999-52240414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
194, 46
               

               
Conread position:
               
443-1035
               

               
Cow position:
               
chr6:53543679-53543058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 103
               

               
Conread position:
               
443-1037
               

               
Cow position:
               
chr6:14143832-14144447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 349
               

               
Conread position:
               
444-581
               

               
Cow position:
               
chr6:26192552-26192691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
452-776
               

               
Cow position:
               
chr6:52301547-52301890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 157
               

               
Conread position:
               
455-711
               

               
Cow position:
               
chr6:55592867-55593134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 113
               

               
Conread position:
               
455-871
               

               
Cow position:
               
chr6:18520271-18519831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
455-1026
               

               
Cow position:
               
chr6:45480265-45479672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 169
               

               
Conread position:
               
455-1026
               

               
Cow position:
               
chr6:61829040-61829645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
457-1023
               

               
Cow position:
               
chr6:14950853-14950243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 603
               

               
Conread position:
               
460-608
               

               
Cow position:
               
chr6:11639406-11639262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
460-820
               

               
Cow position:
               
chr6:14305443-14305824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
162, 15
               

               
Conread position:
               
462-1035
               

               
Cow position:
               
chr6:3573615-3574211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
462-1035
               

               
Cow position:
               
chr6:60332161-60332769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
463-1014
               

               
Cow position:
               
chr6:9234331-9234915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
464-909
               

               
Cow position:
               
chr6:57181640-57182103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 377
               

               
Conread position:
               
464-1037
               

               
Cow position:
               
chr6:530060-529466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 52
               

               
Conread position:
               
465-778
               

               
Cow position:
               
chr6:44509887-44510214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 29
               

               
Conread position:
               
467-876
               

               
Cow position:
               
chr6:61161047-61161446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
468-608
               

               
Cow position:
               
chr6:42135944-42135804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
471-592
               

               
Cow position:
               
chr6:38274418-38274540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
471-623
               

               
Cow position:
               
chr6:31978396-31978548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
471-990
               

               
Cow position:
               
chr6:30317114-30316565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
471-1012
               

               
Cow position:
               
chr6:58605357-58605929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 374
               

               
Conread position:
               
471-1041
               

               
Cow position:
               
chr6:24632417-24631820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
472-799
               

               
Cow position:
               
chr6:17927254-17927595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
475-713
               

               
Cow position:
               
chr6:13315482-13315232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
475-998
               

               
Cow position:
               
chr6:30077448-30076897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
476-1026
               

               
Cow position:
               
chr6:22044176-22043593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 440
               

               
Conread position:
               
477-1000
               

               
Cow position:
               
chr6:2641381-2641908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 7
               

               
Conread position:
               
483-990
               

               
Cow position:
               
chr6:62001511-62000964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
486-764
               

               
Cow position:
               
chr6:48122365-48122651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
133, 114
               

               
Conread position:
               
488-1035
               

               
Cow position:
               
chr6:6182862-6182301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
490-747
               

               
Cow position:
               
chr6:1262728-1263003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
498-1037
               

               
Cow position:
               
chr6:1498056-1498628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
502-989
               

               
Cow position:
               
chr6:64887837-64888346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 143
               

               
Conread position:
               
505-1035
               

               
Cow position:
               
chr6:32419814-32420372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
507-915
               

               
Cow position:
               
chr6:43049332-43048900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
518-855
               

               
Cow position:
               
chr6:18571704-18571349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
518-857
               

               
Cow position:
               
chr6:39897824-39898187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
518-911
               

               
Cow position:
               
chr6:46218564-46218984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
518-1023
               

               
Cow position:
               
chr6:57521048-57521588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
520-1023
               

               
Cow position:
               
chr6:55945550-55945016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 198
               

               
Conread position:
               
523-1026
               

               
Cow position:
               
chr6:33508144-33508662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 265
               

               
Conread position:
               
529-915
               

               
Cow position:
               
chr6:4388625-4389036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
530-912
               

               
Cow position:
               
chr6:32427048-32427443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
530-1023
               

               
Cow position:
               
chr6:58880101-58880609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 95
               

               
Conread position:
               
532-1020
               

               
Cow position:
               
chr6:14290597-14290104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
533-915
               

               
Cow position:
               
chr6:2452737-2453141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 166
               

               
Conread position:
               
534-1026
               

               
Cow position:
               
chr6:67553123-67553648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
534-1027
               

               
Cow position:
               
chr6:52245403-52245918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
537-990
               

               
Cow position:
               
chr6:618309-618792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
95, 308
               

               
Conread position:
               
541-888
               

               
Cow position:
               
chr6:16699103-16699455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
92, 262
               

               
Conread position:
               
545-990
               

               
Cow position:
               
chr6:65848461-65847989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
545-1023
               

               
Cow position:
               
chr6:31940768-31941280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
545-1035
               

               
Cow position:
               
chr6:705907-706423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 91
               

               
Conread position:
               
545-1035
               

               
Cow position:
               
chr6:8634399-8633899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 416
               

               
Conread position:
               
546-1026
               

               
Cow position:
               
chr6:47024941-47025474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
551-889
               

               
Cow position:
               
chr6:55042214-55041860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
552-862
               

               
Cow position:
               
chr6:4680503-4680831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
554-910
               

               
Cow position:
               
chr6:18150373-18150001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
555-1026
               

               
Cow position:
               
chr6:67173466-67173972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
556-915
               

               
Cow position:
               
chr6:18970515-18970147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
560-956
               

               
Cow position:
               
chr6:33983739-33984161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
560-960
               

               
Cow position:
               
chr6:6595339-6595772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 404
               

               
Conread position:
               
563-1035
               

               
Cow position:
               
chr6:27527040-27526541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 451
               

               
Conread position:
               
567-837
               

               
Cow position:
               
chr6:58072583-58072873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
567-997
               

               
Cow position:
               
chr6:41556258-41556709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
568-1023
               

               
Cow position:
               
chr6:727696-727218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 132
               

               
Conread position:
               
569-880
               

               
Cow position:
               
chr6:40759955-40760281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
569-915
               

               
Cow position:
               
chr6:1105224-1104871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
71, 209
               

               
Conread position:
               
570-1026
               

               
Cow position:
               
chr6:16674632-16675091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
570-1035
               

               
Cow position:
               
chr6:16624707-16625205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
571-859
               

               
Cow position:
               
chr6:49625760-49626069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 198
               

               
Conread position:
               
571-1027
               

               
Cow position:
               
chr6:35600605-35601095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 353
               

               
Conread position:
               
572-1020
               

               
Cow position:
               
chr6:52978227-52977758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
573-906
               

               
Cow position:
               
chr6:67211659-67211308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 264
               

               
Conread position:
               
573-1023
               

               
Cow position:
               
chr6:50113620-50114090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
573-1026
               

               
Cow position:
               
chr6:12997351-12997835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
573-1026
               

               
Cow position:
               
chr6:49732734-49733201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
573-1037
               

               
Cow position:
               
chr6:2089212-2089702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 129
               

               
Conread position:
               
574-1026
               

               
Cow position:
               
chr6:33809504-33809018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
575-910
               

               
Cow position:
               
chr6:45279868-45280226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 180
               

               
Conread position:
               
575-1039
               

               
Cow position:
               
chr6:47171013-47171491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 219
               

               
Conread position:
               
576-955
               

               
Cow position:
               
chr6:58016291-58016694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
577-1023
               

               
Cow position:
               
chr6:34030220-34030668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 235
               

               
Conread position:
               
577-1037
               

               
Cow position:
               
chr6:47573735-47574216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
578-1023
               

               
Cow position:
               
chr6:47150035-47149554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 259
               

               
Conread position:
               
580-1023
               

               
Cow position:
               
chr6:11453932-11453454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
584-985
               

               
Cow position:
               
chr6:29085435-29085007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
45, 267
               

               
Conread position:
               
587-1026
               

               
Cow position:
               
chr6:17386466-17386939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
587-1037
               

               
Cow position:
               
chr6:17112222-17111739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
588-1035
               

               
Cow position:
               
chr6:38438550-38439035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
599-1037
               

               
Cow position:
               
chr6:7105574-7105107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 256
               

               
Conread position:
               
603-1020
               

               
Cow position:
               
chr6:2186823-2186372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
603-1035
               

               
Cow position:
               
chr6:1796586-1797050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 254
               

               
Conread position:
               
604-948
               

               
Cow position:
               
chr6:65892909-65892543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 176
               

               
Conread position:
               
608-1026
               

               
Cow position:
               
chr6:67448962-67448510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
611-1035
               

               
Cow position:
               
chr6:7112966-7112513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
24, 278
               

               
Conread position:
               
613-1026
               

               
Cow position:
               
chr6:14897153-14897597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
20, 299
               

               
Conread position:
               
639-964
               

               
Cow position:
               
chr6:47154413-47154761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 214
               

               
Conread position:
               
639-1023
               

               
Cow position:
               
chr6:11639191-11638793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
644-1023
               

               
Cow position:
               
chr6:57856774-57857183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
652-969
               

               
Cow position:
               
chr6:18963324-18962986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
652-1014
               

               
Cow position:
               
chr6:28481350-28481730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
652-1023
               

               
Cow position:
               
chr6:452250-451850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr6:843815-843411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr6:6034784-6034383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 258
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr6:6569205-6568816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr6:12926586-12926989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chr6:23568580-23568177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-1035
               

               
Cow position:
               
chr6:2618550-2618142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 383
               

               
Conread position:
               
652-1035
               

               
Cow position:
               
chr6:23880043-23879634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 318
               

               
Conread position:
               
652-1040
               

               
Cow position:
               
chr6:40813378-40813790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 371
               

               
Conread position:
               
661-1035
               

               
Cow position:
               
chr6:17556643-17556248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 187
               

               
Conread position:
               
667-1027
               

               
Cow position:
               
chr6:46764367-46763989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 219
               

               
Conread position:
               
668-989
               

               
Cow position:
               
chr6:64252160-64252487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 56
               

               
Conread position:
               
668-990
               

               
Cow position:
               
chr6:13405264-13405600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 319
               

               
Conread position:
               
668-1023
               

               
Cow position:
               
chr6:224470-224095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 234
               

               
Conread position:
               
668-1026
               

               
Cow position:
               
chr6:53537108-53537492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
672-848
               

               
Cow position:
               
chr6:34017969-34017781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
672-854
               

               
Cow position:
               
chr6:13850778-13850972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
672-985
               

               
Cow position:
               
chr6:59507278-59507590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
672-990
               

               
Cow position:
               
chr6:64425832-64426167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 138
               

               
Conread position:
               
672-1004
               

               
Cow position:
               
chr6:46633159-46633512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chr6:49761503-49761876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 172
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:3485379-3485003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:18987183-18987546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:21711746-21712122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:21857325-21856959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 327
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:32286594-32286967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
48, 188
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:45736803-45736452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chr6:63177083-63177459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1027
               

               
Cow position:
               
chr6:35825109-35825459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
192, 73
               

               
Conread position:
               
672-1040
               

               
Cow position:
               
chr6:53672378-53672762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
673-990
               

               
Cow position:
               
chr6:34405342-34405682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 132
               

               
Conread position:
               
674-1006
               

               
Cow position:
               
chr6:34237048-34236698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
675-990
               

               
Cow position:
               
chr6:62326317-62326650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
676-1035
               

               
Cow position:
               
chr6:39136546-39136923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 308
               

               
Conread position:
               
677-1027
               

               
Cow position:
               
chr6:46284054-46283683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
678-1035
               

               
Cow position:
               
chr6:1834041-1834420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 189
               

               
Conread position:
               
681-1027
               

               
Cow position:
               
chr6:35704472-35704100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 164
               

               
Conread position:
               
682-1035
               

               
Cow position:
               
chr6:6944889-6944522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
688-1038
               

               
Cow position:
               
chr6:16410116-16410482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
689-1041
               

               
Cow position:
               
chr6:10598061-10598432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
696-1035
               

               
Cow position:
               
chr6:13314965-13314605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
697-1035
               

               
Cow position:
               
chr6:24624073-24623717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
19, 167
               

               
Conread position:
               
698-1027
               

               
Cow position:
               
chr6:52557557-52557234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
216, 12
               

               
Conread position:
               
699-963
               

               
Cow position:
               
chr6:24126520-24126242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
700-1026
               

               
Cow position:
               
chr6:45666850-45666514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
712-1023
               

               
Cow position:
               
chr6:42988714-42988392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
713-875
               

               
Cow position:
               
chr6:33996834-33997002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
713-885
               

               
Cow position:
               
chr6:28112969-28112791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
713-905
               

               
Cow position:
               
chr6:50113139-50113336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
713-913
               

               
Cow position:
               
chr6:18497410-18497616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
713-964
               

               
Cow position:
               
chr6:49963866-49963598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
713-982
               

               
Cow position:
               
chr6:43038981-43038699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
713-990
               

               
Cow position:
               
chr6:25180095-25179805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 148
               

               
Conread position:
               
713-991
               

               
Cow position:
               
chr6:4274157-4274450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 184
               

               
Conread position:
               
713-1014
               

               
Cow position:
               
chr6:27939121-27939437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 280
               

               
Conread position:
               
713-1023
               

               
Cow position:
               
chr6:65909415-65909740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr6:18803971-18803643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr6:19718672-19718984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 208
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr6:21163390-21163719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chr6:29484067-29484393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
24, 130
               

               
Conread position:
               
713-1027
               

               
Cow position:
               
chr6:27534716-27534375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr6:10681081-10681409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr6:16644983-16645309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 208
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chr6:28157178-28156845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
67, 117
               

               
Conread position:
               
714-915
               

               
Cow position:
               
chr6:9587623-9587830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
714-994
               

               
Cow position:
               
chr6:58595318-58595025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
714-1007
               

               
Cow position:
               
chr6:52000828-52001148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
714-1018
               

               
Cow position:
               
chr6:28844573-28844265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
714-1035
               

               
Cow position:
               
chr6:55593158-55593495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 300
               

               
Conread position:
               
715-1026
               

               
Cow position:
               
chr6:14264164-14263841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
716-994
               

               
Cow position:
               
chr6:48947565-48947273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
716-1020
               

               
Cow position:
               
chr6:7176475-7176158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
719-1026
               

               
Cow position:
               
chr6:11401413-11401736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
719-1026
               

               
Cow position:
               
chr6:27094493-27094171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 147
               

               
Conread position:
               
719-1026
               

               
Cow position:
               
chr6:52066028-52065705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
720-1020
               

               
Cow position:
               
chr6:33896548-33896232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 163
               

               
Conread position:
               
723-915
               

               
Cow position:
               
chr6:57228690-57228887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
723-1035
               

               
Cow position:
               
chr6:56925829-56926158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
723-1043
               

               
Cow position:
               
chr6:17150077-17149737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 284
               

               
Conread position:
               
726-1026
               

               
Cow position:
               
chr6:19044314-19044622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
728-1023
               

               
Cow position:
               
chr6:1274743-1274441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 108
               

               
Conread position:
               
728-1023
               

               
Cow position:
               
chr6:29688967-29689271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
731-938
               

               
Cow position:
               
chr6:16221023-16220812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
732-1023
               

               
Cow position:
               
chr6:21588090-21588397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 294
               

               
Conread position:
               
738-1035
               

               
Cow position:
               
chr6:33300777-33301093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
739-1023
               

               
Cow position:
               
chr6:55903202-55903502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
739-1026
               

               
Cow position:
               
chr6:1263281-1263572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
740-990
               

               
Cow position:
               
chr6:45792848-45793113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
740-1023
               

               
Cow position:
               
chr6:6471819-6471523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
740-1026
               

               
Cow position:
               
chr6:8754340-8754039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
741-1026
               

               
Cow position:
               
chr6:43778821-43779108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
741-1029
               

               
Cow position:
               
chr6:6613431-6613715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
741-1044
               

               
Cow position:
               
chr6:44097821-44098139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
743-1035
               

               
Cow position:
               
chr6:32018995-32018677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
768-1004
               

               
Cow position:
               
chr6:19336230-19335987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
771-995
               

               
Cow position:
               
chr6:64315401-64315183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
773-1012
               

               
Cow position:
               
chr6:40251644-40251397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 45
               

               
Conread position:
               
774-1036
               

               
Cow position:
               
chr6:51673928-51674192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
775-994
               

               
Cow position:
               
chr6:57383571-57383798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
138, 212
               

               
Conread position:
               
776-1004
               

               
Cow position:
               
chr6:53742083-53742314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
776-1026
               

               
Cow position:
               
chr6:12971552-12971812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
778-1026
               

               
Cow position:
               
chr6:2111241-2110984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
133, 113
               

               
Conread position:
               
778-1026
               

               
Cow position:
               
chr6:17344358-17344615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
778-1026
               

               
Cow position:
               
chr6:46225804-46225549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 216
               

               
Conread position:
               
778-1027
               

               
Cow position:
               
chr6:12388296-12388045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
778-1035
               

               
Cow position:
               
chr6:7215953-7216220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
133, 199
               

               
Conread position:
               
778-1035
               

               
Cow position:
               
chr6:51876923-51877178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
778-1037
               

               
Cow position:
               
chr6:10694880-10695148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
139, 179
               

               
Conread position:
               
778-1042
               

               
Cow position:
               
chr6:44510248-44510518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
779-1026
               

               
Cow position:
               
chr6:55361636-55361379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
781-1023
               

               
Cow position:
               
chr6:22225812-22225570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
199, 84
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chr6:508361-508105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr6:7448658-7448920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
783-1035
               

               
Cow position:
               
chr6:9322166-9322426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
786-1026
               

               
Cow position:
               
chr6:20268146-20267900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
787-1029
               

               
Cow position:
               
chr6:50801472-50801223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
788-983
               

               
Cow position:
               
chr6:12099682-12099877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
789-1035
               

               
Cow position:
               
chr6:18912565-18912310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
124, 225
               

               
Conread position:
               
789-1035
               

               
Cow position:
               
chr6:28135921-28136176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
792-1026
               

               
Cow position:
               
chr6:3987884-3987640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
795-1035
               

               
Cow position:
               
chr6:27887087-27887336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
116, 163
               

               
Conread position:
               
796-1004
               

               
Cow position:
               
chr6:48881923-48882141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
796-1026
               

               
Cow position:
               
chr6:20581600-20581360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
796-1035
               

               
Cow position:
               
chr6:65941832-65941584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
797-1034
               

               
Cow position:
               
chr6:5096628-5096384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
798-1026
               

               
Cow position:
               
chr6:32664924-32664686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
799-1040
               

               
Cow position:
               
chr6:54358339-54358095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
801-1035
               

               
Cow position:
               
chr6:6601714-6601484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
804-910
               

               
Cow position:
               
chr6:10605153-10605048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
804-1023
               

               
Cow position:
               
chr6:11389430-11389201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
805-1023
               

               
Cow position:
               
chr6:1109192-1109421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
806-1035
               

               
Cow position:
               
chr6:54887405-54887168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
811-1026
               

               
Cow position:
               
chr6:41233116-41233339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
815-1026
               

               
Cow position:
               
chr6:653602-653381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
825-1026
               

               
Cow position:
               
chr6:17773191-17773402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
834-1026
               

               
Cow position:
               
chr6:57329492-57329694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
839-1026
               

               
Cow position:
               
chr6:34017503-34017306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
845-1026
               

               
Cow position:
               
chr6:20216171-20215980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
854-1020
               

               
Cow position:
               
chr6:25408455-25408284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
864-1026
               

               
Cow position:
               
chr6:1245677-1245505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
864-1035
               

               
Cow position:
               
chr6:48873080-48872899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
865-1023
               

               
Cow position:
               
chr6:10266882-10266714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
870-990
               

               
Cow position:
               
chr6:61632383-61632513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
877-1023
               

               
Cow position:
               
chr6:32419527-32419683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
878-1023
               

               
Cow position:
               
chr6:39092885-39093030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.