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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01C080083.5
        

               
Conread position:
               
192-1026
               

               
Cow position:
               
chrX:30200602-30199739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
864
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
440, 0
               

               
Conread position:
               
241-1027
               

               
Cow position:
               
chrX:5649951-5649149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
818
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
271-1026
               

               
Cow position:
               
chrX:9127510-9128309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
271-1027
               

               
Cow position:
               
chrX:7095923-7096712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
331-493
               

               
Cow position:
               
chrX:35887616-35887780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
331-963
               

               
Cow position:
               
chrX:40828571-40827921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 45
               

               
Conread position:
               
332-493
               

               
Cow position:
               
chrX:12178470-12178307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
332-526
               

               
Cow position:
               
chrX:27615199-27615392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
332-560
               

               
Cow position:
               
chrX:6280283-6280065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
332-571
               

               
Cow position:
               
chrX:23985006-23985240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
332-642
               

               
Cow position:
               
chrX:17488114-17487803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
103, 91
               

               
Conread position:
               
332-706
               

               
Cow position:
               
chrX:2487178-2487552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 81
               

               
Conread position:
               
332-714
               

               
Cow position:
               
chrX:36839241-36839613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 242
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chrX:4557863-4558401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 84
               

               
Conread position:
               
332-913
               

               
Cow position:
               
chrX:26341675-26341080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
310, 210
               

               
Conread position:
               
332-967
               

               
Cow position:
               
chrX:6855148-6854529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 68
               

               
Conread position:
               
332-1020
               

               
Cow position:
               
chrX:322431-323161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 443
               

               
Conread position:
               
332-1023
               

               
Cow position:
               
chrX:13406760-13406040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 79
               

               
Conread position:
               
332-1023
               

               
Cow position:
               
chrX:16278184-16278902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 245
               

               
Conread position:
               
332-1026
               

               
Cow position:
               
chrX:3406811-3406089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 121
               

               
Conread position:
               
332-1026
               

               
Cow position:
               
chrX:4623428-4622700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 0
               

               
Conread position:
               
332-1026
               

               
Cow position:
               
chrX:30053943-30053215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 0
               

               
Conread position:
               
332-1027
               

               
Cow position:
               
chrX:26623277-26622568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 121
               

               
Conread position:
               
332-1035
               

               
Cow position:
               
chrX:7484332-7485069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 0
               

               
Conread position:
               
332-1037
               

               
Cow position:
               
chrX:28519187-28518456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 242
               

               
Conread position:
               
332-1038
               

               
Cow position:
               
chrX:33537125-33537840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 118
               

               
Conread position:
               
336-562
               

               
Cow position:
               
chrX:20741098-20740873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
336-579
               

               
Cow position:
               
chrX:13056313-13056564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
336-593
               

               
Cow position:
               
chrX:19212764-19212511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
254, 124
               

               
Conread position:
               
336-623
               

               
Cow position:
               
chrX:302651-302935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
336-784
               

               
Cow position:
               
chrX:18289557-18289090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
336-1026
               

               
Cow position:
               
chrX:4342281-4343004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 0
               

               
Conread position:
               
336-1027
               

               
Cow position:
               
chrX:29941710-29942410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 119
               

               
Conread position:
               
337-526
               

               
Cow position:
               
chrX:29286808-29286996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
337-535
               

               
Cow position:
               
chrX:42009161-42009359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
337-555
               

               
Cow position:
               
chrX:23236422-23236644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
337-562
               

               
Cow position:
               
chrX:503347-503126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
127, 81
               

               
Conread position:
               
337-564
               

               
Cow position:
               
chrX:3155986-3155759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 57
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chrX:1788090-1788326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
337-576
               

               
Cow position:
               
chrX:36690924-36690679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
337-593
               

               
Cow position:
               
chrX:2226464-2226727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
337-598
               

               
Cow position:
               
chrX:37872723-37872984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
185, 108
               

               
Conread position:
               
337-606
               

               
Cow position:
               
chrX:35027838-35028101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
337-618
               

               
Cow position:
               
chrX:2145493-2145769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
337-622
               

               
Cow position:
               
chrX:7810427-7810144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
75, 160
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chrX:387667-387950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chrX:22331240-22330960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
337-623
               

               
Cow position:
               
chrX:33815291-33815008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
337-627
               

               
Cow position:
               
chrX:26433911-26434201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 64
               

               
Conread position:
               
337-630
               

               
Cow position:
               
chrX:731031-730743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
337-641
               

               
Cow position:
               
chrX:2606950-2607254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 102
               

               
Conread position:
               
337-641
               

               
Cow position:
               
chrX:13179328-13179011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chrX:509558-509261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 113
               

               
Conread position:
               
337-642
               

               
Cow position:
               
chrX:17664667-17664360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
337-755
               

               
Cow position:
               
chrX:35384310-35383882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
337-756
               

               
Cow position:
               
chrX:6247671-6247249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
182, 64
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chrX:37761240-37761677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 212
               

               
Conread position:
               
337-775
               

               
Cow position:
               
chrX:13281998-13282453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 75
               

               
Conread position:
               
337-776
               

               
Cow position:
               
chrX:29877994-29877548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
337-777
               

               
Cow position:
               
chrX:15992842-15993293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 15
               

               
Conread position:
               
337-778
               

               
Cow position:
               
chrX:21317978-21318441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
337-812
               

               
Cow position:
               
chrX:21627895-21627409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 49
               

               
Conread position:
               
337-817
               

               
Cow position:
               
chrX:24260840-24260340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 158
               

               
Conread position:
               
337-826
               

               
Cow position:
               
chrX:16023607-16024114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 99
               

               
Conread position:
               
337-834
               

               
Cow position:
               
chrX:41528282-41527749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
337-844
               

               
Cow position:
               
chrX:30316706-30317227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
293, 78
               

               
Conread position:
               
337-858
               

               
Cow position:
               
chrX:13415896-13415368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
337-954
               

               
Cow position:
               
chrX:33829575-33830217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
337-985
               

               
Cow position:
               
chrX:4413419-4414076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
270, 27
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chrX:4300410-4299741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 541
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chrX:5278798-5278135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 27
               

               
Conread position:
               
337-990
               

               
Cow position:
               
chrX:20651953-20652630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
337-992
               

               
Cow position:
               
chrX:24175415-24174733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 177
               

               
Conread position:
               
337-992
               

               
Cow position:
               
chrX:43074434-43075103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 158
               

               
Conread position:
               
337-1014
               

               
Cow position:
               
chrX:2381996-2382709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
337-1020
               

               
Cow position:
               
chrX:9403166-9402498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 87
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:4767228-4767940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 182
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:11074616-11073949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 138
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:20363606-20362891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 73
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:23217606-23218319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 40
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:24110076-24109354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 300
               

               
Conread position:
               
337-1023
               

               
Cow position:
               
chrX:41885657-41884929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 521
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chrX:26507786-26508480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 99
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chrX:29225008-29225731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 0
               

               
Conread position:
               
337-1026
               

               
Cow position:
               
chrX:34008316-34009004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chrX:4327156-4326428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
337-1027
               

               
Cow position:
               
chrX:27070375-27071098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 74
               

               
Conread position:
               
337-1037
               

               
Cow position:
               
chrX:30090504-30089782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 165
               

               
Conread position:
               
337-1043
               

               
Cow position:
               
chrX:2879190-2878489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
107, 99
               

               
Conread position:
               
337-1044
               

               
Cow position:
               
chrX:29765544-29766271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 74
               

               
Conread position:
               
338-478
               

               
Cow position:
               
chrX:6196506-6196365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
338-623
               

               
Cow position:
               
chrX:8513826-8514106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
338-661
               

               
Cow position:
               
chrX:16067838-16067521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
338-990
               

               
Cow position:
               
chrX:13070204-13069526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 226
               

               
Conread position:
               
338-990
               

               
Cow position:
               
chrX:13090765-13090087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 226
               

               
Conread position:
               
338-1026
               

               
Cow position:
               
chrX:28667418-28666704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
338-1035
               

               
Cow position:
               
chrX:31979309-31978579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 510
               

               
Conread position:
               
338-1035
               

               
Cow position:
               
chrX:40694171-40693467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 294
               

               
Conread position:
               
339-450
               

               
Cow position:
               
chrX:2047618-2047729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-491
               

               
Cow position:
               
chrX:29758893-29758741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-508
               

               
Cow position:
               
chrX:21642870-21642701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-510
               

               
Cow position:
               
chrX:13244191-13244362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-539
               

               
Cow position:
               
chrX:7120027-7120226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
339-539
               

               
Cow position:
               
chrX:10300792-10300596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
339-552
               

               
Cow position:
               
chrX:16086158-16086368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
339-560
               

               
Cow position:
               
chrX:34006695-34006486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
339-568
               

               
Cow position:
               
chrX:21414127-21414356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-570
               

               
Cow position:
               
chrX:2117857-2117626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-585
               

               
Cow position:
               
chrX:1528537-1528291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
67, 86
               

               
Conread position:
               
339-585
               

               
Cow position:
               
chrX:21767165-21767410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 232
               

               
Conread position:
               
339-617
               

               
Cow position:
               
chrX:26749736-26749459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 128
               

               
Conread position:
               
339-618
               

               
Cow position:
               
chrX:20133621-20133365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
339-623
               

               
Cow position:
               
chrX:23453519-23453236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
339-639
               

               
Cow position:
               
chrX:14459873-14459572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-639
               

               
Cow position:
               
chrX:15142626-15142327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 17
               

               
Conread position:
               
339-640
               

               
Cow position:
               
chrX:28648349-28648047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-643
               

               
Cow position:
               
chrX:47215081-47214787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chrX:5281250-5280946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 84
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chrX:37814683-37814989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-668
               

               
Cow position:
               
chrX:20725503-20725837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-673
               

               
Cow position:
               
chrX:12345469-12345813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
339-673
               

               
Cow position:
               
chrX:30167548-30167209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 112
               

               
Conread position:
               
339-700
               

               
Cow position:
               
chrX:34552924-34553293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
339-705
               

               
Cow position:
               
chrX:27000502-27000862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
339-711
               

               
Cow position:
               
chrX:13431401-13431019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 94
               

               
Conread position:
               
339-714
               

               
Cow position:
               
chrX:38150132-38150516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 150
               

               
Conread position:
               
339-733
               

               
Cow position:
               
chrX:3465829-3465417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 294
               

               
Conread position:
               
339-746
               

               
Cow position:
               
chrX:21750968-21750552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 112
               

               
Conread position:
               
339-747
               

               
Cow position:
               
chrX:5549913-5550339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-747
               

               
Cow position:
               
chrX:22837514-22837940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-750
               

               
Cow position:
               
chrX:3418684-3418254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 112
               

               
Conread position:
               
339-759
               

               
Cow position:
               
chrX:22577915-22577506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
180, 139
               

               
Conread position:
               
339-778
               

               
Cow position:
               
chrX:12464539-12464997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 193
               

               
Conread position:
               
339-778
               

               
Cow position:
               
chrX:29094782-29094329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 89
               

               
Conread position:
               
339-783
               

               
Cow position:
               
chrX:13071913-13071451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-783
               

               
Cow position:
               
chrX:13092473-13092011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-783
               

               
Cow position:
               
chrX:21646748-21646285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
339-799
               

               
Cow position:
               
chrX:43437371-43436890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 177
               

               
Conread position:
               
339-828
               

               
Cow position:
               
chrX:19590627-19590123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
339-833
               

               
Cow position:
               
chrX:37904580-37905090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
339-838
               

               
Cow position:
               
chrX:5640349-5639835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 198
               

               
Conread position:
               
339-839
               

               
Cow position:
               
chrX:5298708-5298184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-854
               

               
Cow position:
               
chrX:11951221-11950699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 108
               

               
Conread position:
               
339-883
               

               
Cow position:
               
chrX:18462882-18463451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
339-891
               

               
Cow position:
               
chrX:12185617-12186209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 509
               

               
Conread position:
               
339-903
               

               
Cow position:
               
chrX:29171248-29170661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
339-912
               

               
Cow position:
               
chrX:38153175-38152593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 188
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chrX:5294810-5294214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 150
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chrX:21892041-21892640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 106
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chrX:26442715-26442119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chrX:27595694-27595094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
339-915
               

               
Cow position:
               
chrX:37487479-37488089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
339-948
               

               
Cow position:
               
chrX:12997378-12996735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 94
               

               
Conread position:
               
339-948
               

               
Cow position:
               
chrX:32145724-32145080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-952
               

               
Cow position:
               
chrX:5426622-5427251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 465
               

               
Conread position:
               
339-960
               

               
Cow position:
               
chrX:16045504-16046150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-960
               

               
Cow position:
               
chrX:23134131-23134777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 98
               

               
Conread position:
               
339-981
               

               
Cow position:
               
chrX:21832424-21833092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 72
               

               
Conread position:
               
339-985
               

               
Cow position:
               
chrX:32328742-32329420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
339-990
               

               
Cow position:
               
chrX:26756107-26755425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 547
               

               
Conread position:
               
339-997
               

               
Cow position:
               
chrX:16804333-16803643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 136
               

               
Conread position:
               
339-1002
               

               
Cow position:
               
chrX:39561127-39560430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 120
               

               
Conread position:
               
339-1004
               

               
Cow position:
               
chrX:36536197-36535500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
339-1010
               

               
Cow position:
               
chrX:9010866-9011568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 263
               

               
Conread position:
               
339-1010
               

               
Cow position:
               
chrX:32064635-32063930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 0
               

               
Conread position:
               
339-1013
               

               
Cow position:
               
chrX:28556902-28557601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 147
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chrX:14125712-14125005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 219
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chrX:14782813-14782104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1014
               

               
Cow position:
               
chrX:30164696-30163997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 33
               

               
Conread position:
               
339-1016
               

               
Cow position:
               
chrX:18951198-18950493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 204
               

               
Conread position:
               
339-1020
               

               
Cow position:
               
chrX:2480096-2479377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1021
               

               
Cow position:
               
chrX:30166127-30165414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 72
               

               
Conread position:
               
339-1022
               

               
Cow position:
               
chrX:14597389-14598094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 382
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:5247926-5248635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 115
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:11462461-11461746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 523
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:15122629-15121911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:15978419-15977703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 425
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:16525336-16526040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 211
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:16809280-16808564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 136
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:21793123-21793841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 264
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:22539502-22538783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:22611943-22612652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 9
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:22818607-22819328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 198
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:23279559-23280274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 464
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:23573275-23572566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 132
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:24468590-24467874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 294
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:24483829-24483117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 97
               

               
Conread position:
               
339-1023
               

               
Cow position:
               
chrX:27317763-27318481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1024
               

               
Cow position:
               
chrX:27978290-27977583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 92
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:1549498-1550218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 116
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:2813943-2813229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 379
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:4906464-4905737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:5332899-5332180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 509
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:5354768-5354050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 464
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:5360542-5361263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:6236307-6235603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 115
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:6580467-6581187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 701
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:7552269-7551548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:7754439-7755158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 112
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:8640320-8641041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:9095175-9095895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 661
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:10529252-10528533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 509
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:12144631-12145355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:15621999-15621279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 661
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:16360470-16359754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 237
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:16702216-16702924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 91
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:16710501-16711209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 91
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:17054103-17054822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 261
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:17782037-17782753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 150
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:18221947-18222666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 13
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:18489194-18488461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 277
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:19398310-19399031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:19474616-19473906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 600
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:19608209-19608929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 264
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:20357467-20356742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 697
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:22565152-22564434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 640
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:23039449-23038733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 114
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:24412560-24413283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 112
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:26231226-26230505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:26274678-26275391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 173
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:27423736-27423030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:27591488-27590777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 554
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:28587514-28588224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 383
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:28753804-28753087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 684
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:29911867-29912592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 508
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:30137323-30136617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 85
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:31495272-31495989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 40
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:35532388-35533107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:36194628-36195345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1026
               

               
Cow position:
               
chrX:41848001-41847277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 273
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chrX:16781815-16782534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chrX:29891639-29892341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 143
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chrX:30229579-30228859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 0
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chrX:31728009-31728717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 117
               

               
Conread position:
               
339-1027
               

               
Cow position:
               
chrX:39697301-39698015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 124
               

               
Conread position:
               
339-1029
               

               
Cow position:
               
chrX:27983822-27983098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 513
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:672459-671731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:2560415-2559698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 294
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:2578953-2579681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 374
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:3360355-3361083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 38
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:3373319-3372591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 234
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:5321179-5320455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 115
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:10867317-10866607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 124
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:11146804-11146071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:11976914-11976184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:12308230-12307500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:14461851-14462576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:15261084-15260357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:16035975-16035253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 234
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:16854833-16854124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 600
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:21226013-21226739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 91
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:21342928-21343657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:21389110-21389840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:21581975-21582705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 8
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:21591826-21592553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 73
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:22810428-22811152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 545
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:23388015-23387276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 541
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:23395139-23395869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:24770324-24769595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 657
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:29098952-29099679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 263
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:29916811-29916084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 85
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:30181392-30180665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 679
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:31201373-31202103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 662
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:35938508-35937814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 146
               

               
Conread position:
               
339-1035
               

               
Cow position:
               
chrX:39713085-39713813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 85
               

               
Conread position:
               
339-1037
               

               
Cow position:
               
chrX:17891075-17891810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 204
               

               
Conread position:
               
339-1039
               

               
Cow position:
               
chrX:8481984-8482713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 98
               

               
Conread position:
               
339-1039
               

               
Cow position:
               
chrX:13929201-13928476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 233
               

               
Conread position:
               
340-605
               

               
Cow position:
               
chrX:3144338-3144599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
340-738
               

               
Cow position:
               
chrX:35023276-35023675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 85
               

               
Conread position:
               
340-778
               

               
Cow position:
               
chrX:39564763-39564298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 454
               

               
Conread position:
               
340-872
               

               
Cow position:
               
chrX:24444536-24443966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
340-1023
               

               
Cow position:
               
chrX:24589195-24588486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 233
               

               
Conread position:
               
340-1026
               

               
Cow position:
               
chrX:22077807-22077089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 508
               

               
Conread position:
               
340-1027
               

               
Cow position:
               
chrX:28606551-28605842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 309
               

               
Conread position:
               
340-1035
               

               
Cow position:
               
chrX:18657271-18656543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 111
               

               
Conread position:
               
341-526
               

               
Cow position:
               
chrX:37839487-37839672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-631
               

               
Cow position:
               
chrX:12312468-12312177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
341-1014
               

               
Cow position:
               
chrX:22492571-22493272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
341-1023
               

               
Cow position:
               
chrX:23222494-23221793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 449
               

               
Conread position:
               
341-1026
               

               
Cow position:
               
chrX:5865679-5866399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 111
               

               
Conread position:
               
341-1026
               

               
Cow position:
               
chrX:12359425-12360141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 101
               

               
Conread position:
               
342-631
               

               
Cow position:
               
chrX:9086245-9086534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 109
               

               
Conread position:
               
342-684
               

               
Cow position:
               
chrX:18243817-18243469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
342-724
               

               
Cow position:
               
chrX:9260885-9261279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 0
               

               
Conread position:
               
342-1026
               

               
Cow position:
               
chrX:3082609-3081878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
343-777
               

               
Cow position:
               
chrX:41880584-41880136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 7
               

               
Conread position:
               
344-656
               

               
Cow position:
               
chrX:18460564-18460255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
345-1026
               

               
Cow position:
               
chrX:27304469-27305182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 400
               

               
Conread position:
               
347-560
               

               
Cow position:
               
chrX:21253820-21254032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
347-597
               

               
Cow position:
               
chrX:360069-360320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
348-598
               

               
Cow position:
               
chrX:17260322-17260076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
348-762
               

               
Cow position:
               
chrX:22126240-22125844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 138
               

               
Conread position:
               
348-1004
               

               
Cow position:
               
chrX:25450876-25451567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 409
               

               
Conread position:
               
348-1035
               

               
Cow position:
               
chrX:26530516-26531235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 142
               

               
Conread position:
               
349-859
               

               
Cow position:
               
chrX:28212368-28212896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 74
               

               
Conread position:
               
350-990
               

               
Cow position:
               
chrX:3581481-3582156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 145
               

               
Conread position:
               
350-1027
               

               
Cow position:
               
chrX:17610905-17610201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
350-1051
               

               
Cow position:
               
chrX:2009163-2008424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
355-911
               

               
Cow position:
               
chrX:24462890-24462315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
356-478
               

               
Cow position:
               
chrX:21661035-21660910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
356-915
               

               
Cow position:
               
chrX:24734219-24734793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 110
               

               
Conread position:
               
356-1006
               

               
Cow position:
               
chrX:7120157-7120840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 65
               

               
Conread position:
               
356-1035
               

               
Cow position:
               
chrX:26446649-26447341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 423
               

               
Conread position:
               
357-757
               

               
Cow position:
               
chrX:4995204-4995616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 342
               

               
Conread position:
               
357-1026
               

               
Cow position:
               
chrX:23021864-23022566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
357-1026
               

               
Cow position:
               
chrX:29791253-29790566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 95
               

               
Conread position:
               
357-1035
               

               
Cow position:
               
chrX:42732432-42733134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
360-990
               

               
Cow position:
               
chrX:19877384-19878033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 273
               

               
Conread position:
               
363-1026
               

               
Cow position:
               
chrX:28625196-28624508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
364-640
               

               
Cow position:
               
chrX:20366613-20366338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
364-672
               

               
Cow position:
               
chrX:16407109-16407422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
364-825
               

               
Cow position:
               
chrX:39765120-39765600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
365-651
               

               
Cow position:
               
chrX:35936198-35935915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
47, 39
               

               
Conread position:
               
367-1026
               

               
Cow position:
               
chrX:37851699-37852389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 10
               

               
Conread position:
               
371-1020
               

               
Cow position:
               
chrX:9170041-9169367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 0
               

               
Conread position:
               
371-1026
               

               
Cow position:
               
chrX:30965424-30964733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
372-1026
               

               
Cow position:
               
chrX:26617696-26618377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 211
               

               
Conread position:
               
379-1026
               

               
Cow position:
               
chrX:34094278-34094959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 0
               

               
Conread position:
               
379-1026
               

               
Cow position:
               
chrX:35287018-35287678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 51
               

               
Conread position:
               
379-1035
               

               
Cow position:
               
chrX:11743844-11744529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 203
               

               
Conread position:
               
380-1009
               

               
Cow position:
               
chrX:27497405-27498065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 320
               

               
Conread position:
               
380-1026
               

               
Cow position:
               
chrX:29908636-29907949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
381-526
               

               
Cow position:
               
chrX:18192973-18193118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
381-827
               

               
Cow position:
               
chrX:11458244-11457770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
383-498
               

               
Cow position:
               
chrX:38228653-38228537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
384-842
               

               
Cow position:
               
chrX:38588333-38587855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 445
               

               
Conread position:
               
385-1035
               

               
Cow position:
               
chrX:39547981-39548661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 215
               

               
Conread position:
               
388-627
               

               
Cow position:
               
chrX:45023523-45023755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
388-640
               

               
Cow position:
               
chrX:12034505-12034262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
241, 33
               

               
Conread position:
               
388-858
               

               
Cow position:
               
chrX:45112388-45112866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 185
               

               
Conread position:
               
388-915
               

               
Cow position:
               
chrX:30436037-30435485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
388-1023
               

               
Cow position:
               
chrX:29880698-29880030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
388-1026
               

               
Cow position:
               
chrX:10413369-10412722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 112
               

               
Conread position:
               
388-1046
               

               
Cow position:
               
chrX:20800370-20801057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 511
               

               
Conread position:
               
390-710
               

               
Cow position:
               
chrX:4481280-4481614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
395-622
               

               
Cow position:
               
chrX:4063668-4063446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
397-1035
               

               
Cow position:
               
chrX:30059487-30060151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
399-740
               

               
Cow position:
               
chrX:24928387-24928746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
399-884
               

               
Cow position:
               
chrX:32129372-32129878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 97
               

               
Conread position:
               
400-775
               

               
Cow position:
               
chrX:39387874-39387482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
401-1020
               

               
Cow position:
               
chrX:16041082-16040432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 62
               

               
Conread position:
               
404-1026
               

               
Cow position:
               
chrX:11409737-11409081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 0
               

               
Conread position:
               
405-707
               

               
Cow position:
               
chrX:2501187-2501499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 152
               

               
Conread position:
               
408-1026
               

               
Cow position:
               
chrX:42223151-42222520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 5
               

               
Conread position:
               
411-994
               

               
Cow position:
               
chrX:24293057-24292442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 33
               

               
Conread position:
               
411-1023
               

               
Cow position:
               
chrX:22579772-22579137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 151
               

               
Conread position:
               
411-1023
               

               
Cow position:
               
chrX:28879973-28879344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 345
               

               
Conread position:
               
412-622
               

               
Cow position:
               
chrX:30687988-30688197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
412-783
               

               
Cow position:
               
chrX:23269580-23269192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
211, 39
               

               
Conread position:
               
413-707
               

               
Cow position:
               
chrX:46295974-46296278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 188
               

               
Conread position:
               
413-1026
               

               
Cow position:
               
chrX:21767410-21768057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 157
               

               
Conread position:
               
420-1026
               

               
Cow position:
               
chrX:8435585-8434950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 351
               

               
Conread position:
               
421-1026
               

               
Cow position:
               
chrX:30836001-30836640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
422-1035
               

               
Cow position:
               
chrX:41155926-41156573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 428
               

               
Conread position:
               
424-1012
               

               
Cow position:
               
chrX:37080895-37080279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 13
               

               
Conread position:
               
425-644
               

               
Cow position:
               
chrX:1948810-1948591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
208, 9
               

               
Conread position:
               
426-1026
               

               
Cow position:
               
chrX:28132723-28133349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
427-1026
               

               
Cow position:
               
chrX:18024371-18023739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 9
               

               
Conread position:
               
428-1011
               

               
Cow position:
               
chrX:10410445-10409849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
194, 42
               

               
Conread position:
               
432-1026
               

               
Cow position:
               
chrX:21494061-21494666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 324
               

               
Conread position:
               
434-632
               

               
Cow position:
               
chrX:19541717-19541521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
435-961
               

               
Cow position:
               
chrX:24321999-24321439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 99
               

               
Conread position:
               
436-582
               

               
Cow position:
               
chrX:22512592-22512446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-1035
               

               
Cow position:
               
chrX:7572020-7572648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 575
               

               
Conread position:
               
443-1027
               

               
Cow position:
               
chrX:40070966-40070357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
445-811
               

               
Cow position:
               
chrX:30286049-30286434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 155
               

               
Conread position:
               
454-1035
               

               
Cow position:
               
chrX:27754072-27754689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 611
               

               
Conread position:
               
455-642
               

               
Cow position:
               
chrX:31972473-31972289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
177, 40
               

               
Conread position:
               
455-1026
               

               
Cow position:
               
chrX:2047765-2048365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 38
               

               
Conread position:
               
455-1026
               

               
Cow position:
               
chrX:5290036-5289433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 519
               

               
Conread position:
               
455-1035
               

               
Cow position:
               
chrX:38962199-38961588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 123
               

               
Conread position:
               
456-912
               

               
Cow position:
               
chrX:2184889-2185354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 122
               

               
Conread position:
               
456-1026
               

               
Cow position:
               
chrX:25818166-25817569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 48
               

               
Conread position:
               
457-642
               

               
Cow position:
               
chrX:27339657-27339474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
175, 38
               

               
Conread position:
               
458-1026
               

               
Cow position:
               
chrX:24345700-24346302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
460-1026
               

               
Cow position:
               
chrX:34221433-34222018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
461-646
               

               
Cow position:
               
chrX:36155059-36155244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
464-734
               

               
Cow position:
               
chrX:1977536-1977808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
465-1015
               

               
Cow position:
               
chrX:164565-165138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
159, 315
               

               
Conread position:
               
467-665
               

               
Cow position:
               
chrX:21500364-21500559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
467-714
               

               
Cow position:
               
chrX:22119347-22119086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 136
               

               
Conread position:
               
468-1035
               

               
Cow position:
               
chrX:30135652-30135085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 157
               

               
Conread position:
               
471-1035
               

               
Cow position:
               
chrX:24316480-24317084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 531
               

               
Conread position:
               
473-1021
               

               
Cow position:
               
chrX:2299561-2300130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 144
               

               
Conread position:
               
475-1035
               

               
Cow position:
               
chrX:6044784-6044206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 237
               

               
Conread position:
               
476-905
               

               
Cow position:
               
chrX:9067740-9068186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
477-1026
               

               
Cow position:
               
chrX:38231597-38231014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
482-708
               

               
Cow position:
               
chrX:41305513-41305275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
484-1035
               

               
Cow position:
               
chrX:29082753-29083329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 124
               

               
Conread position:
               
486-698
               

               
Cow position:
               
chrX:39694488-39694707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
486-783
               

               
Cow position:
               
chrX:4134234-4133920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
486-907
               

               
Cow position:
               
chrX:9535222-9535667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 40
               

               
Conread position:
               
486-908
               

               
Cow position:
               
chrX:9836591-9837040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 221
               

               
Conread position:
               
487-1037
               

               
Cow position:
               
chrX:15151972-15151411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
488-817
               

               
Cow position:
               
chrX:30073117-30073461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
144, 234
               

               
Conread position:
               
490-838
               

               
Cow position:
               
chrX:34034058-34034424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
142, 278
               

               
Conread position:
               
490-1026
               

               
Cow position:
               
chrX:29759384-29759941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 228
               

               
Conread position:
               
496-1035
               

               
Cow position:
               
chrX:23342302-23341729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
497-1029
               

               
Cow position:
               
chrX:33583377-33583950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
500-990
               

               
Cow position:
               
chrX:25052227-25051705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
513-915
               

               
Cow position:
               
chrX:20741564-20741985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
514-982
               

               
Cow position:
               
chrX:5375569-5375068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 203
               

               
Conread position:
               
518-733
               

               
Cow position:
               
chrX:15176426-15176193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
518-1035
               

               
Cow position:
               
chrX:27615524-27616070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 333
               

               
Conread position:
               
518-1035
               

               
Cow position:
               
chrX:29287707-29288255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 310
               

               
Conread position:
               
530-1020
               

               
Cow position:
               
chrX:8400824-8400314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 271
               

               
Conread position:
               
530-1023
               

               
Cow position:
               
chrX:31261890-31261383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
530-1035
               

               
Cow position:
               
chrX:3650104-3649561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 467
               

               
Conread position:
               
531-764
               

               
Cow position:
               
chrX:45042355-45042111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
531-832
               

               
Cow position:
               
chrX:15590702-15590382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
531-911
               

               
Cow position:
               
chrX:19396956-19397354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 254
               

               
Conread position:
               
531-915
               

               
Cow position:
               
chrX:24446678-24447086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
531-1026
               

               
Cow position:
               
chrX:9642701-9642179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
532-838
               

               
Cow position:
               
chrX:20952838-20953162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 305
               

               
Conread position:
               
532-1014
               

               
Cow position:
               
chrX:23985976-23986491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
537-901
               

               
Cow position:
               
chrX:15349483-15349094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
537-1035
               

               
Cow position:
               
chrX:18193420-18193952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
538-831
               

               
Cow position:
               
chrX:41906001-41905682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
541-803
               

               
Cow position:
               
chrX:37839882-37840168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
541-1041
               

               
Cow position:
               
chrX:5365857-5365326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 212
               

               
Conread position:
               
545-1026
               

               
Cow position:
               
chrX:5647366-5646851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
545-1037
               

               
Cow position:
               
chrX:21661756-21662300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 461
               

               
Conread position:
               
549-835
               

               
Cow position:
               
chrX:31964672-31964978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
74, 237
               

               
Conread position:
               
549-1023
               

               
Cow position:
               
chrX:20999530-20999027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 292
               

               
Conread position:
               
552-936
               

               
Cow position:
               
chrX:502942-502536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 300
               

               
Conread position:
               
552-1020
               

               
Cow position:
               
chrX:21414612-21415114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
552-1027
               

               
Cow position:
               
chrX:25282749-25282239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 236
               

               
Conread position:
               
553-1026
               

               
Cow position:
               
chrX:6279854-6279354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
553-1027
               

               
Cow position:
               
chrX:18247104-18247607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
555-1027
               

               
Cow position:
               
chrX:6656269-6655782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
556-854
               

               
Cow position:
               
chrX:864857-865177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
76, 285
               

               
Conread position:
               
556-905
               

               
Cow position:
               
chrX:22616622-22616249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
556-964
               

               
Cow position:
               
chrX:21818699-21818272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
557-1023
               

               
Cow position:
               
chrX:44193685-44193190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
557-1035
               

               
Cow position:
               
chrX:34760816-34761328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
558-1035
               

               
Cow position:
               
chrX:14802068-14801558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 275
               

               
Conread position:
               
558-1035
               

               
Cow position:
               
chrX:21685361-21685881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 199
               

               
Conread position:
               
563-1035
               

               
Cow position:
               
chrX:20953293-20953795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 220
               

               
Conread position:
               
566-1026
               

               
Cow position:
               
chrX:16085899-16085405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
566-1035
               

               
Cow position:
               
chrX:6371939-6372442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
567-864
               

               
Cow position:
               
chrX:13912182-13911864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 259
               

               
Conread position:
               
567-1014
               

               
Cow position:
               
chrX:27758469-27758949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 440
               

               
Conread position:
               
569-1014
               

               
Cow position:
               
chrX:30172944-30172465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 193
               

               
Conread position:
               
569-1023
               

               
Cow position:
               
chrX:7276726-7277194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 276
               

               
Conread position:
               
569-1041
               

               
Cow position:
               
chrX:1794413-1793922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 201
               

               
Conread position:
               
570-963
               

               
Cow position:
               
chrX:17228738-17229154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 203
               

               
Conread position:
               
572-1014
               

               
Cow position:
               
chrX:19212317-19211849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
572-1035
               

               
Cow position:
               
chrX:22869584-22870084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
573-1004
               

               
Cow position:
               
chrX:36691614-36692061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 220
               

               
Conread position:
               
573-1014
               

               
Cow position:
               
chrX:28633688-28633227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 364
               

               
Conread position:
               
573-1026
               

               
Cow position:
               
chrX:20020338-20020832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 284
               

               
Conread position:
               
573-1035
               

               
Cow position:
               
chrX:29849851-29849367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
574-1027
               

               
Cow position:
               
chrX:25847590-25848055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 211
               

               
Conread position:
               
577-915
               

               
Cow position:
               
chrX:9228131-9227771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 280
               

               
Conread position:
               
579-1035
               

               
Cow position:
               
chrX:38228538-38228051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
591-1027
               

               
Cow position:
               
chrX:9899552-9899090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 247
               

               
Conread position:
               
594-984
               

               
Cow position:
               
chrX:38998634-38999042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
599-1035
               

               
Cow position:
               
chrX:4406678-4407145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
600-1023
               

               
Cow position:
               
chrX:39556978-39556545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
600-1035
               

               
Cow position:
               
chrX:11991350-11990888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
603-1026
               

               
Cow position:
               
chrX:6453494-6453950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
604-1035
               

               
Cow position:
               
chrX:22809062-22809515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 282
               

               
Conread position:
               
610-1023
               

               
Cow position:
               
chrX:34442625-34442192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
613-1014
               

               
Cow position:
               
chrX:6406177-6406592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
639-1023
               

               
Cow position:
               
chrX:17890014-17889610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
652-875
               

               
Cow position:
               
chrX:37186732-37186971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 177
               

               
Conread position:
               
652-1023
               

               
Cow position:
               
chrX:20503493-20503890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 234
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chrX:10445563-10445162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chrX:14050343-14049941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 260
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chrX:16087273-16086870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 222
               

               
Conread position:
               
652-1026
               

               
Cow position:
               
chrX:36729234-36729637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
653-914
               

               
Cow position:
               
chrX:37815030-37815309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 191
               

               
Conread position:
               
653-1023
               

               
Cow position:
               
chrX:1617378-1616984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 186
               

               
Conread position:
               
661-915
               

               
Cow position:
               
chrX:8104640-8104375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 204
               

               
Conread position:
               
661-1026
               

               
Cow position:
               
chrX:15140664-15140283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 111
               

               
Conread position:
               
661-1035
               

               
Cow position:
               
chrX:16465173-16465563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
663-1020
               

               
Cow position:
               
chrX:16325656-16325280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
663-1035
               

               
Cow position:
               
chrX:10439040-10438664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 182
               

               
Conread position:
               
668-914
               

               
Cow position:
               
chrX:29779841-29779598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 165
               

               
Conread position:
               
669-1014
               

               
Cow position:
               
chrX:730450-730088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
45, 220
               

               
Conread position:
               
672-850
               

               
Cow position:
               
chrX:27029008-27029197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
672-852
               

               
Cow position:
               
chrX:7177592-7177784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
672-856
               

               
Cow position:
               
chrX:29482859-29482663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
672-875
               

               
Cow position:
               
chrX:25292202-25291987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-956
               

               
Cow position:
               
chrX:29930515-29930209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-990
               

               
Cow position:
               
chrX:6201410-6201743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 161
               

               
Conread position:
               
672-1020
               

               
Cow position:
               
chrX:17664038-17663670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chrX:620383-620014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
672-1023
               

               
Cow position:
               
chrX:45374222-45373858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chrX:2103282-2103658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chrX:13178729-13178354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chrX:20674745-20675121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chrX:25289802-25289426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1026
               

               
Cow position:
               
chrX:32643363-32643739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chrX:11499897-11499514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chrX:23452570-23452183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chrX:30455739-30455359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 161
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chrX:30681621-30681242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
672-1035
               

               
Cow position:
               
chrX:45401125-45400755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
672-1041
               

               
Cow position:
               
chrX:28647392-28647002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
673-1027
               

               
Cow position:
               
chrX:2145855-2146225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
673-1035
               

               
Cow position:
               
chrX:18243871-18244247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
673-1035
               

               
Cow position:
               
chrX:27451154-27450787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
674-990
               

               
Cow position:
               
chrX:24310220-24309883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 193
               

               
Conread position:
               
674-1035
               

               
Cow position:
               
chrX:6870683-6870302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
675-1026
               

               
Cow position:
               
chrX:5334933-5334562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
675-1027
               

               
Cow position:
               
chrX:3224615-3224257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
677-1035
               

               
Cow position:
               
chrX:8590462-8590844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
678-1027
               

               
Cow position:
               
chrX:3155697-3155331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
679-1023
               

               
Cow position:
               
chrX:38852047-38852411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
686-1026
               

               
Cow position:
               
chrX:22887558-22887913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 259
               

               
Conread position:
               
688-998
               

               
Cow position:
               
chrX:39352718-39352396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
688-1014
               

               
Cow position:
               
chrX:17290075-17290421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 169
               

               
Conread position:
               
688-1027
               

               
Cow position:
               
chrX:20792035-20792390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 292
               

               
Conread position:
               
696-1035
               

               
Cow position:
               
chrX:4481883-4482218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
710-1020
               

               
Cow position:
               
chrX:30160066-30159744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
710-1027
               

               
Cow position:
               
chrX:16046080-16046401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
713-915
               

               
Cow position:
               
chrX:29047039-29047247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
713-1010
               

               
Cow position:
               
chrX:40225310-40225003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
713-1020
               

               
Cow position:
               
chrX:22118570-22118247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
713-1023
               

               
Cow position:
               
chrX:33685055-33685381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
713-1023
               

               
Cow position:
               
chrX:47000729-47000403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 176
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:10059390-10059718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:12310461-12310136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:17994386-17994712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:28503260-28503589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:34564038-34564345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
713-1026
               

               
Cow position:
               
chrX:41791795-41791462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chrX:26760644-26760306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chrX:37404305-37403972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
713-1035
               

               
Cow position:
               
chrX:46296586-46296922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 317
               

               
Conread position:
               
714-975
               

               
Cow position:
               
chrX:9261339-9261609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 174
               

               
Conread position:
               
714-985
               

               
Cow position:
               
chrX:29690713-29690437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
714-1020
               

               
Cow position:
               
chrX:12289663-12289968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
714-1023
               

               
Cow position:
               
chrX:34553683-34553994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
66, 122
               

               
Conread position:
               
714-1027
               

               
Cow position:
               
chrX:36839639-36839960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
714-1035
               

               
Cow position:
               
chrX:35023995-35024321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
715-990
               

               
Cow position:
               
chrX:35383842-35383567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 67
               

               
Conread position:
               
716-966
               

               
Cow position:
               
chrX:5841242-5841504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
717-963
               

               
Cow position:
               
chrX:3652602-3652857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 40
               

               
Conread position:
               
718-1023
               

               
Cow position:
               
chrX:40184001-40184323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
718-1026
               

               
Cow position:
               
chrX:40560608-40560288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
718-1035
               

               
Cow position:
               
chrX:41734260-41733928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
723-1026
               

               
Cow position:
               
chrX:15175615-15175299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
724-1023
               

               
Cow position:
               
chrX:12345831-12346146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
724-1035
               

               
Cow position:
               
chrX:2500695-2500369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
57, 269
               

               
Conread position:
               
725-1035
               

               
Cow position:
               
chrX:33804050-33803733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
726-1035
               

               
Cow position:
               
chrX:35608930-35609248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
727-1004
               

               
Cow position:
               
chrX:9764133-9763841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
54, 287
               

               
Conread position:
               
727-1026
               

               
Cow position:
               
chrX:39185111-39185426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
728-1027
               

               
Cow position:
               
chrX:3465135-3464823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
730-1023
               

               
Cow position:
               
chrX:28058263-28058571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 301
               

               
Conread position:
               
730-1035
               

               
Cow position:
               
chrX:3418197-3417875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 303
               

               
Conread position:
               
732-1026
               

               
Cow position:
               
chrX:33763088-33763398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
732-1026
               

               
Cow position:
               
chrX:38150632-38150941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
732-1041
               

               
Cow position:
               
chrX:24279860-24280188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
733-915
               

               
Cow position:
               
chrX:21750297-21750113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
739-915
               

               
Cow position:
               
chrX:24928392-24928210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
739-990
               

               
Cow position:
               
chrX:29700991-29700726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
739-1026
               

               
Cow position:
               
chrX:22838222-22838525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
739-1035
               

               
Cow position:
               
chrX:25573303-25573611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 268
               

               
Conread position:
               
739-1035
               

               
Cow position:
               
chrX:32584980-32584669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
743-907
               

               
Cow position:
               
chrX:16688025-16688180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
745-1042
               

               
Cow position:
               
chrX:44901100-44901406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
746-1035
               

               
Cow position:
               
chrX:27095094-27095391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
750-1004
               

               
Cow position:
               
chrX:5427232-5427491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
750-1027
               

               
Cow position:
               
chrX:22308605-22308323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
751-1035
               

               
Cow position:
               
chrX:13031688-13031390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 218
               

               
Conread position:
               
753-1027
               

               
Cow position:
               
chrX:5280887-5280601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
755-1026
               

               
Cow position:
               
chrX:13205921-13206205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
26, 219
               

               
Conread position:
               
769-1026
               

               
Cow position:
               
chrX:12651837-12651568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
772-915
               

               
Cow position:
               
chrX:29842190-29842047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
777-1026
               

               
Cow position:
               
chrX:2293606-2293347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
778-912
               

               
Cow position:
               
chrX:21645793-21645660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
778-915
               

               
Cow position:
               
chrX:2933007-2932870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
778-990
               

               
Cow position:
               
chrX:3144624-3144846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
778-1026
               

               
Cow position:
               
chrX:12465033-12465285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
778-1027
               

               
Cow position:
               
chrX:18455775-18455516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
778-1035
               

               
Cow position:
               
chrX:2486637-2486370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
133, 230
               

               
Conread position:
               
778-1035
               

               
Cow position:
               
chrX:12178669-12178941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 205
               

               
Conread position:
               
779-1035
               

               
Cow position:
               
chrX:37832453-37832205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
780-1026
               

               
Cow position:
               
chrX:41879922-41879663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
780-1037
               

               
Cow position:
               
chrX:1056390-1056122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
781-992
               

               
Cow position:
               
chrX:15993443-15993664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 106
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chrX:28867017-28866759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
781-1026
               

               
Cow position:
               
chrX:39731139-39730886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
130, 170
               

               
Conread position:
               
781-1036
               

               
Cow position:
               
chrX:37117907-37118173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
78, 72
               

               
Conread position:
               
782-1023
               

               
Cow position:
               
chrX:44053815-44054055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
105, 134
               

               
Conread position:
               
782-1027
               

               
Cow position:
               
chrX:3397004-3396754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
784-1026
               

               
Cow position:
               
chrX:4995617-4995863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
786-1026
               

               
Cow position:
               
chrX:1947938-1947697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
129, 86
               

               
Conread position:
               
786-1026
               

               
Cow position:
               
chrX:21254782-21255032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
792-1026
               

               
Cow position:
               
chrX:39939744-39939500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
125, 228
               

               
Conread position:
               
792-1027
               

               
Cow position:
               
chrX:3211527-3211282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 86
               

               
Conread position:
               
794-988
               

               
Cow position:
               
chrX:44874489-44874288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
795-1026
               

               
Cow position:
               
chrX:38330396-38330635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
118, 169
               

               
Conread position:
               
795-1035
               

               
Cow position:
               
chrX:39559341-39559101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
110, 159
               

               
Conread position:
               
796-915
               

               
Cow position:
               
chrX:28766095-28765976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
796-1013
               

               
Cow position:
               
chrX:28156552-28156771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
796-1027
               

               
Cow position:
               
chrX:22125842-22125601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 146
               

               
Conread position:
               
797-1019
               

               
Cow position:
               
chrX:5392561-5392330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
115, 226
               

               
Conread position:
               
797-1023
               

               
Cow position:
               
chrX:30196312-30196548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
797-1026
               

               
Cow position:
               
chrX:150494-150724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
797-1035
               

               
Cow position:
               
chrX:21063489-21063733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
803-1035
               

               
Cow position:
               
chrX:19929456-19929697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
805-1037
               

               
Cow position:
               
chrX:37134611-37134369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
810-1027
               

               
Cow position:
               
chrX:39701896-39702108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
811-1026
               

               
Cow position:
               
chrX:30688113-30688332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
816-1043
               

               
Cow position:
               
chrX:6766701-6766464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
817-1035
               

               
Cow position:
               
chrX:23415661-23415433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
822-1035
               

               
Cow position:
               
chrX:23317370-23317150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
823-1037
               

               
Cow position:
               
chrX:40365706-40365481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
824-1023
               

               
Cow position:
               
chrX:15113713-15113922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
830-1035
               

               
Cow position:
               
chrX:41527462-41527252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
831-1020
               

               
Cow position:
               
chrX:45042476-45042677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
833-1035
               

               
Cow position:
               
chrX:5124309-5124097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
834-1026
               

               
Cow position:
               
chrX:11565965-11566167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
838-1023
               

               
Cow position:
               
chrX:23969408-23969601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
839-1035
               

               
Cow position:
               
chrX:6543321-6543524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 124
               

               
Conread position:
               
842-1050
               

               
Cow position:
               
chrX:8144818-8144604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
845-1026
               

               
Cow position:
               
chrX:27750310-27750500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 160
               

               
Conread position:
               
846-1026
               

               
Cow position:
               
chrX:13031148-13030958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
863-1026
               

               
Cow position:
               
chrX:45903268-45903430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
864-1021
               

               
Cow position:
               
chrX:20580374-20580541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
864-1023
               

               
Cow position:
               
chrX:2159846-2160014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
864-1035
               

               
Cow position:
               
chrX:865477-865658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
873-1026
               

               
Cow position:
               
chrX:19109951-19109788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
873-1026
               

               
Cow position:
               
chrX:39293128-39292965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
878-1035
               

               
Cow position:
               
chrX:35388812-35388657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
892-1027
               

               
Cow position:
               
chrX:13071461-13071326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
892-1027
               

               
Cow position:
               
chrX:13092021-13091886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
910-1023
               

               
Cow position:
               
chrX:35847362-35847475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
910-1026
               

               
Cow position:
               
chrX:40581026-40580910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
910-1034
               

               
Cow position:
               
chrX:16688405-16688529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
910-1035
               

               
Cow position:
               
chrX:19657634-19657759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
912-1035
               

               
Cow position:
               
chrX:37488868-37488991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.